FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6778, 152 aa
  1>>>pF1KB6778 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0426+/-0.000593; mu= 13.2113+/- 0.036
 mean_var=59.0972+/-11.450, 0's: 0 Z-trim(111.1): 8  B-trim: 0 in 0/52
 Lambda= 0.166836
 statistics sampled from 12122 (12125) to 12122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS4149.1 IL3 gene_id:3562|Hs108|chr5             ( 152)  998 247.7 2.1e-66


>>CCDS4149.1 IL3 gene_id:3562|Hs108|chr5                  (152 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 1305.8  bits: 247.7 E(32554): 2.1e-66
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB6 MSRLPVLLLLQLLVRPGLQAPMTQTTPLKTSWVNCSNMIDEIITHLKQPPLPLLDFNNLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSRLPVLLLLQLLVRPGLQAPMTQTTPLKTSWVNCSNMIDEIITHLKQPPLPLLDFNNLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GEDQDILMENNLRRPNLEAFNRAVKSLQNASAIESILKNLLPCLPLATAAPTRHPIHIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GEDQDILMENNLRRPNLEAFNRAVKSLQNASAIESILKNLLPCLPLATAAPTRHPIHIKD
               70        80        90       100       110       120

              130       140       150  
pF1KB6 GDWNEFRRKLTFYLKTLENAQAQQTTLSLAIF
       ::::::::::::::::::::::::::::::::
CCDS41 GDWNEFRRKLTFYLKTLENAQAQQTTLSLAIF
              130       140       150  




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:37:53 2016 done: Sun Nov  6 04:37:53 2016
 Total Scan time:  1.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]