Result of FASTA (ccds) for
pFN21AB6759
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6759, 109 aa
1>>>pF1KB6759 109 - 109 aa - 109 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6416+/-0.000562; mu= 13.2050+/- 0.034
mean_var=54.8351+/-10.847, 0's: 0 Z-trim(112.0): 50 B-trim: 92 in 1/51
Lambda= 0.173199
statistics sampled from 12755 (12805) to 12755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.393), width: 16
Scan time: 1.410
The best scores are: opt bits E(32554)
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 ( 99) 669 174.1 1.4e-44
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 ( 99) 482 127.4 1.6e-30
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 456 120.9 1.4e-28
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 443 117.6 1.4e-27
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 431 114.6 1.1e-26
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 248 68.9 6e-13
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 240 66.9 2.4e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 ( 119) 223 62.7 5.6e-11
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 220 61.9 7.7e-11
>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 (99 aa)
initn: 669 init1: 669 opt: 669 Z-score: 914.1 bits: 174.1 E(32554): 1.4e-44
Smith-Waterman score: 669; 100.0% identity (100.0% similar) in 99 aa overlap (11-109:1-99)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
60 70 80 90
>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 (99 aa)
initn: 501 init1: 478 opt: 482 Z-score: 661.5 bits: 127.4 E(32554): 1.6e-30
Smith-Waterman score: 482; 69.4% identity (85.7% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::::::::::::.:::: ::::::::... :.:::.: :::: .::: :
CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLAS
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: :::. .:::::::::: .::.:::::..::.::: :::. :. :
CCDS11 YRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
60 70 80 90
>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 (97 aa)
initn: 349 init1: 349 opt: 456 Z-score: 626.6 bits: 120.9 E(32554): 1.4e-28
Smith-Waterman score: 456; 68.7% identity (86.9% similar) in 99 aa overlap (11-109:1-97)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:::::::: :::.::.::::::: : .:.: :::::. :::::.:::::
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLES
10 20 30 40
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: :::. .::..::::::: .:..:::::..::.::::.::: . ::
CCDS11 YRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
50 60 70 80 90
>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa)
initn: 459 init1: 439 opt: 443 Z-score: 608.9 bits: 117.6 E(32554): 1.4e-27
Smith-Waterman score: 443; 65.3% identity (81.6% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::.::::::::: ::.::::::::: ... :::. ::.::: :::::
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: : :. .::.:::::::: ::.:::: ..::.: :::::. :. :
CCDS11 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
60 70 80 90
>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa)
initn: 429 init1: 245 opt: 431 Z-score: 592.7 bits: 114.6 E(32554): 1.1e-26
Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (11-108:1-97)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:::::.:::::::.:.:.::::::::....: ::::. ..:: .:::.:
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKS
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
:. ::. .::..::::.:: :::.::::::.::.. :::: . ..::
CCDS11 YV-ITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 242 init1: 143 opt: 248 Z-score: 345.9 bits: 68.9 E(32554): 6e-13
Smith-Waterman score: 248; 41.8% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
:.::.: : .:: . .. : :. : ... : .:::. .:.:: . . .
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . :. :: : .::: ::::..:::::.:.::. .. :.
CCDS32 YFE-TSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 254 init1: 122 opt: 240 Z-score: 335.2 bits: 66.9 E(32554): 2.4e-12
Smith-Waterman score: 240; 37.4% identity (72.5% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
::. ...: ::...:.: .:. : . . : .:::. ::.: . . .
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVD
10 20 30 40 50
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . ... : . ::.:.:::.:.:::::.: ::.. . :.
CCDS11 YYETSSL-CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 (119 aa)
initn: 209 init1: 209 opt: 223 Z-score: 310.6 bits: 62.7 E(32554): 5.6e-11
Smith-Waterman score: 223; 37.4% identity (62.6% similar) in 99 aa overlap (11-109:5-98)
10 20 30 40 50 60
pF1KB6 MLKLTPLPSKMKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
: . ..:: : . : . : : :: :: ::. ....:: .:. :
CCDS34 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVS
10 20 30 40
70 80 90 100
pF1KB6 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
: . : : .::: ::.:.. :.:::..::. ::.:: .. .:
CCDS34 YQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPV
50 60 70 80 90 100
CCDS34 QRYPGNQTTC
110
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 210 init1: 144 opt: 220 Z-score: 308.1 bits: 61.9 E(32554): 7.7e-11
Smith-Waterman score: 220; 36.6% identity (68.8% similar) in 93 aa overlap (11-102:1-92)
10 20 30 40 50
pF1KB6 MLKLTPLPSKMKVS-AALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLE
::.: ::. .::.. ... . .. . : :::. . ::: ::.
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIM
10 20 30 40 50
60 70 80 90 100
pF1KB6 SYTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
.: . :: :: : ...: ::::. ::..:...::.: .: . .
CCDS32 DYYE-TNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
109 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:09:39 2016 done: Sun Nov 6 21:09:39 2016
Total Scan time: 1.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]