FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6744, 144 aa
  1>>>pF1KB6744 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0924+/-0.000318; mu= 12.9348+/- 0.020
 mean_var=68.5480+/-13.208, 0's: 0 Z-trim(116.5): 5  B-trim: 0 in 0/53
 Lambda= 0.154909
 statistics sampled from 27641 (27646) to 27641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.324), width:  16
 Scan time:  5.120

The best scores are:                                      opt bits E(85289)
NP_000581 (OMIM: 146931) interleukin-9 precursor [ ( 144)  976 226.4 1.3e-59


>>NP_000581 (OMIM: 146931) interleukin-9 precursor [Homo  (144 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 1191.4  bits: 226.4 E(85289): 1.3e-59
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB6 MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGN
               70        80        90       100       110       120

              130       140    
pF1KB6 ALTFLKSLLEIFQKEKMRGMRGKI
       ::::::::::::::::::::::::
NP_000 ALTFLKSLLEIFQKEKMRGMRGKI
              130       140    




144 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:21:52 2016 done: Mon Nov  7 22:21:53 2016
 Total Scan time:  5.120 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]