FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6736, 139 aa
  1>>>pF1KB6736 139 - 139 aa - 139 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8864+/-0.000288; mu= 13.2315+/- 0.018
 mean_var=54.6318+/-10.929, 0's: 0 Z-trim(117.8): 3  B-trim: 47 in 1/56
 Lambda= 0.173521
 statistics sampled from 30110 (30112) to 30110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.353), width:  16
 Scan time:  4.700

The best scores are:                                      opt bits E(85289)
NP_000542 (OMIM: 144700,171300,193300,263400,60853 ( 213)  556 146.5   2e-35
NP_937799 (OMIM: 144700,171300,193300,263400,60853 ( 172)  336 91.4 6.3e-19


>>NP_000542 (OMIM: 144700,171300,193300,263400,608537) v  (213 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 757.0  bits: 146.5 E(85289): 2e-35
Smith-Waterman score: 556; 68.9% identity (82.8% similar) in 122 aa overlap (14-135:32-153)

                                10        20        30        40   
pF1KB6                  MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP
                                     ..:..:.::::   ::::::::: :    :
NP_000 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP
              10        20        30        40        50        60 

            50        60        70        80        90       100   
pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD
       ::::::::: :..:.::.:::.:::::::. :.  :: :: ::   :::..:.: :::::
NP_000 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRD
              70        80        90       100       110       120 

           110       120       130                                 
pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP                        
       : ::: :::::::::::: ::.:::.::::::                            
NP_000 AGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIV
             130       140       150       160       170       180 

NP_000 RSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
             190       200       210   

>>NP_937799 (OMIM: 144700,171300,193300,263400,608537) v  (172 aa)
 initn: 421 init1: 316 opt: 336  Z-score: 460.8  bits: 91.4 E(85289): 6.3e-19
Smith-Waterman score: 336; 62.2% identity (79.3% similar) in 82 aa overlap (14-95:32-113)

                                10        20        30        40   
pF1KB6                  MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP
                                     ..:..:.::::   ::::::::: :    :
NP_937 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP
              10        20        30        40        50        60 

            50        60        70        80        90       100   
pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD
       ::::::::: :..:.::.:::.:::::::. :.  :: :: ::   :::..:        
NP_937 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTLKERC
              70        80        90       100       110       120 

           110       120       130                        
pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP               
                                                          
NP_937 LQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
             130       140       150       160       170  




139 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:49:46 2016 done: Sat Nov  5 22:49:47 2016
 Total Scan time:  4.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]