FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6736, 139 aa
  1>>>pF1KB6736 139 - 139 aa - 139 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1821+/-0.000613; mu= 11.6437+/- 0.037
 mean_var=55.8651+/-11.223, 0's: 0 Z-trim(110.6): 6  B-trim: 0 in 0/50
 Lambda= 0.171595
 statistics sampled from 11724 (11726) to 11724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS2597.1 VHL gene_id:7428|Hs108|chr3             ( 213)  556 145.0 2.1e-35
CCDS2598.1 VHL gene_id:7428|Hs108|chr3             ( 172)  336 90.5 4.3e-19


>>CCDS2597.1 VHL gene_id:7428|Hs108|chr3                  (213 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 749.1  bits: 145.0 E(32554): 2.1e-35
Smith-Waterman score: 556; 68.9% identity (82.8% similar) in 122 aa overlap (14-135:32-153)

                                10        20        30        40   
pF1KB6                  MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP
                                     ..:..:.::::   ::::::::: :    :
CCDS25 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP
              10        20        30        40        50        60 

            50        60        70        80        90       100   
pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD
       ::::::::: :..:.::.:::.:::::::. :.  :: :: ::   :::..:.: :::::
CCDS25 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRD
              70        80        90       100       110       120 

           110       120       130                                 
pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP                        
       : ::: :::::::::::: ::.:::.::::::                            
CCDS25 AGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIV
             130       140       150       160       170       180 

CCDS25 RSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
             190       200       210   

>>CCDS2598.1 VHL gene_id:7428|Hs108|chr3                  (172 aa)
 initn: 421 init1: 316 opt: 336  Z-score: 456.2  bits: 90.5 E(32554): 4.3e-19
Smith-Waterman score: 336; 62.2% identity (79.3% similar) in 82 aa overlap (14-95:32-113)

                                10        20        30        40   
pF1KB6                  MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP
                                     ..:..:.::::   ::::::::: :    :
CCDS25 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP
              10        20        30        40        50        60 

            50        60        70        80        90       100   
pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD
       ::::::::: :..:.::.:::.:::::::. :.  :: :: ::   :::..:        
CCDS25 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTLKERC
              70        80        90       100       110       120 

           110       120       130                        
pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP               
                                                          
CCDS25 LQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
             130       140       150       160       170  




139 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:49:46 2016 done: Sat Nov  5 22:49:46 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]