Result of FASTA (omim) for
pFN21AB6644
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6644, 443 aa
1>>>pF1KB6644 443 - 443 aa - 443 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0281+/-0.000342; mu= -0.2796+/- 0.022
mean_var=336.2921+/-69.647, 0's: 0 Z-trim(124.9): 70 B-trim: 0 in 0/59
Lambda= 0.069938
statistics sampled from 47319 (47400) to 47319 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.556), width: 16
Scan time: 11.390
The best scores are: opt bits E(85289)
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 3078 323.7 6.1e-88
NP_001258807 (OMIM: 602489) KH domain-containing, ( 404) 1697 184.3 5e-46
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 1442 158.5 2.5e-38
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 1273 141.5 3.4e-33
XP_016865834 (OMIM: 610487) PREDICTED: KH domain-c ( 299) 1203 134.3 4.1e-31
XP_016865832 (OMIM: 610487) PREDICTED: KH domain-c ( 305) 1203 134.3 4.2e-31
XP_016865830 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1180 132.0 2.2e-30
XP_011533818 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1180 132.0 2.2e-30
XP_016865826 (OMIM: 610487) PREDICTED: KH domain-c ( 366) 1168 130.9 5.5e-30
XP_016865831 (OMIM: 610487) PREDICTED: KH domain-c ( 316) 1166 130.6 5.7e-30
XP_011533822 (OMIM: 610487) PREDICTED: KH domain-c ( 285) 1143 128.3 2.6e-29
XP_011533821 (OMIM: 610487) PREDICTED: KH domain-c ( 302) 1142 128.2 2.9e-29
XP_011533819 (OMIM: 610487) PREDICTED: KH domain-c ( 320) 1138 127.8 4.1e-29
XP_011533817 (OMIM: 610487) PREDICTED: KH domain-c ( 324) 1138 127.8 4.1e-29
XP_016865828 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1139 128.0 4.1e-29
XP_016865829 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1139 128.0 4.1e-29
XP_016865825 (OMIM: 610487) PREDICTED: KH domain-c ( 367) 1139 128.0 4.2e-29
XP_016865823 (OMIM: 610487) PREDICTED: KH domain-c ( 413) 1139 128.0 4.5e-29
XP_016865824 (OMIM: 610487) PREDICTED: KH domain-c ( 381) 1138 127.9 4.6e-29
XP_011515098 (OMIM: 610421) PREDICTED: KH domain-c ( 346) 1131 127.1 7e-29
XP_005250814 (OMIM: 610421) PREDICTED: KH domain-c ( 318) 1125 126.5 1e-28
XP_011515099 (OMIM: 610421) PREDICTED: KH domain-c ( 319) 1125 126.5 1e-28
XP_005250815 (OMIM: 610421) PREDICTED: KH domain-c ( 302) 1067 120.6 5.6e-27
XP_011515100 (OMIM: 610421) PREDICTED: KH domain-c ( 303) 1022 116.1 1.3e-25
XP_016865836 (OMIM: 610487) PREDICTED: KH domain-c ( 251) 959 109.6 9.4e-24
XP_011515101 (OMIM: 610421) PREDICTED: KH domain-c ( 252) 872 100.9 4.1e-21
XP_016865837 (OMIM: 610487) PREDICTED: KH domain-c ( 180) 806 94.1 3.3e-19
XP_016865833 (OMIM: 610487) PREDICTED: KH domain-c ( 300) 582 71.7 3e-12
XP_016865827 (OMIM: 610487) PREDICTED: KH domain-c ( 364) 582 71.8 3.4e-12
XP_016866993 (OMIM: 609590) PREDICTED: protein qua ( 311) 467 60.1 9.6e-09
XP_011534561 (OMIM: 609590) PREDICTED: protein qua ( 317) 467 60.1 9.7e-09
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319) 467 60.1 9.7e-09
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319) 467 60.1 9.7e-09
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325) 467 60.1 9.9e-09
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333) 467 60.1 1e-08
XP_016866991 (OMIM: 609590) PREDICTED: protein qua ( 337) 467 60.1 1e-08
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341) 467 60.1 1e-08
XP_016866992 (OMIM: 609590) PREDICTED: protein qua ( 318) 460 59.4 1.6e-08
XP_011534560 (OMIM: 609590) PREDICTED: protein qua ( 340) 460 59.4 1.7e-08
XP_011534563 (OMIM: 609590) PREDICTED: protein qua ( 198) 400 53.1 7.5e-07
XP_016865835 (OMIM: 610487) PREDICTED: KH domain-c ( 277) 341 47.3 5.9e-05
XP_011534562 (OMIM: 609590) PREDICTED: protein qua ( 293) 287 41.9 0.0027
>>NP_006550 (OMIM: 602489) KH domain-containing, RNA-bin (443 aa)
initn: 3078 init1: 3078 opt: 3078 Z-score: 1699.9 bits: 323.7 E(85289): 6.1e-88
Smith-Waterman score: 3078; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
370 380 390 400 410 420
430 440
pF1KB6 PSLKAPPARPVKGAYREHPYGRY
:::::::::::::::::::::::
NP_006 PSLKAPPARPVKGAYREHPYGRY
430 440
>>NP_001258807 (OMIM: 602489) KH domain-containing, RNA- (404 aa)
initn: 1685 init1: 1685 opt: 1697 Z-score: 947.3 bits: 184.3 E(85289): 5e-46
Smith-Waterman score: 2741; 91.2% identity (91.2% similar) in 443 aa overlap (1-443:1-404)
10 20 30 40 50 60
pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPK-----------
130 140 150 160
190 200 210 220 230 240
pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
::::::::::::::::::::::::::::::::
NP_001 ----------------------------EEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
170 180 190 200
250 260 270 280 290 300
pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
330 340 350 360 370 380
430 440
pF1KB6 PSLKAPPARPVKGAYREHPYGRY
:::::::::::::::::::::::
NP_001 PSLKAPPARPVKGAYREHPYGRY
390 400
>>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin (349 aa)
initn: 1221 init1: 789 opt: 1442 Z-score: 809.0 bits: 158.5 E(85289): 2.5e-38
Smith-Waterman score: 1442; 63.1% identity (81.4% similar) in 360 aa overlap (97-443:1-349)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
NP_689 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
NP_689 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
NP_689 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : ::
NP_689 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
NP_689 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ
:::: :.:::::::: :. .:.:: :.. : .:.:. :::::::: .:.:..:.
NP_689 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAP
260 270 280 290 300 310
420 430 440
pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY
..: :: :::::: : ..:.:::::::::
NP_689 EEWATTRSSLKAPPQRSARGGYREHPYGRY
320 330 340
>>NP_006549 (OMIM: 610421) KH domain-containing, RNA-bin (346 aa)
initn: 1201 init1: 709 opt: 1273 Z-score: 716.9 bits: 141.5 E(85289): 3.4e-33
Smith-Waterman score: 1273; 58.2% identity (77.7% similar) in 359 aa overlap (100-443:2-346)
70 80 90 100 110 120
pF1KB6 SATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEI
:.::::::::::::::::::::..:.. ::
NP_006 MEEKYLPELMAEKDSLDPSFTHALRLVNQEI
10 20 30
130 140 150 160 170 180
pF1KB6 EKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQE
::.:::..: :::.:.:. .::::: ..:::::::.::::::::.:::.::..:::::
NP_006 EKFQKGEGK--DEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQE
40 50 60 70 80
190 200 210 220 230 240
pF1KB6 ETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAME
:: .:.:.:::::::::::::::::.:. :: ::: ::::.::::.:: :::: :.::.:
NP_006 ETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALE
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 EVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG---RGVP-VRGRGAAPPPPPVPRGRG
:.::::.::. :.: : :. ::.:::: : . :: : .: ::. : : . ::::
NP_006 EIKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGV--PAPAITRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 --VGPPRGALV-RGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRI---PLPP
.. : :..: ::::. ::. ::: : :: .:::: :. : ::
NP_006 GVTARPVGVVVPRGTPT----PRGVLSTRG--PVSRGRGLLTPRAR--GVPPTGYRPPPP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPAPETYEEYGYDDTYA----EQSYEGYEGYYSQ-SQGDSEYYDYGHGEVQDSYEAYGQD
::. ::: :: ::: :. ::::..:.. :: .:. ..::::::: ...:..:::.
NP_006 PPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGADYYDYGHGLSEETYDSYGQE
260 270 280 290 300 310
420 430 440
pF1KB6 DWNGTRPSLKAPPARPVKGAYREHPYGRY
.:...: ::: :: .::.::..:::::
NP_006 EWTNSRH--KAPSARTAKGVYRDQPYGRY
320 330 340
>>XP_016865834 (OMIM: 610487) PREDICTED: KH domain-conta (299 aa)
initn: 972 init1: 789 opt: 1203 Z-score: 679.6 bits: 134.3 E(85289): 4.1e-31
Smith-Waterman score: 1203; 63.6% identity (81.5% similar) in 308 aa overlap (97-391:1-297)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : ::
XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ
:::: :.:::::::: :. .:.:: :.. : .:.:
XP_016 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRY
260 270 280 290
420 430 440
pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY
>>XP_016865832 (OMIM: 610487) PREDICTED: KH domain-conta (305 aa)
initn: 972 init1: 789 opt: 1203 Z-score: 679.5 bits: 134.3 E(85289): 4.2e-31
Smith-Waterman score: 1203; 63.6% identity (81.5% similar) in 308 aa overlap (97-391:1-297)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : ::
XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ
:::: :.:::::::: :. .:.:: :.. : .:.:
XP_016 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRTYRVCGQ
260 270 280 290 300
420 430 440
pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY
>>XP_016865830 (OMIM: 610487) PREDICTED: KH domain-conta (322 aa)
initn: 934 init1: 789 opt: 1180 Z-score: 666.6 bits: 132.0 E(85289): 2.2e-30
Smith-Waterman score: 1180; 59.6% identity (78.4% similar) in 334 aa overlap (97-413:1-322)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : ::
XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400
pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEY--YDYGHG-EVQDSYE
:::: :.:::: . :: : .:..::. :. :. : :: ... ..: .:.
XP_016 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRTYR
260 270 280 290 300 310
410 420 430 440
pF1KB6 AYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY
. ::
XP_016 VCGQ
320
>>XP_011533818 (OMIM: 610487) PREDICTED: KH domain-conta (322 aa)
initn: 934 init1: 789 opt: 1180 Z-score: 666.6 bits: 132.0 E(85289): 2.2e-30
Smith-Waterman score: 1180; 59.6% identity (78.4% similar) in 334 aa overlap (97-413:1-322)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_011 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_011 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_011 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : ::
XP_011 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_011 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400
pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEY--YDYGHG-EVQDSYE
:::: :.:::: . :: : .:..::. :. :. : :: ... ..: .:.
XP_011 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRTYR
260 270 280 290 300 310
410 420 430 440
pF1KB6 AYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY
. ::
XP_011 VCGQ
320
>>XP_016865826 (OMIM: 610487) PREDICTED: KH domain-conta (366 aa)
initn: 1183 init1: 789 opt: 1168 Z-score: 659.4 bits: 130.9 E(85289): 5.5e-30
Smith-Waterman score: 1398; 60.2% identity (77.7% similar) in 377 aa overlap (97-443:1-366)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : ::
XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390
pF1KB6 PPPAPETYEEY-----------------GYDDTYA----EQSYEGYEGYY-SQSQGDSEY
:::: :.:::: :::: :. .:.:: :.. : .:.:. ::
XP_016 PPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQTYETYDNSYATQTQSVPEY
260 270 280 290 300 310
400 410 420 430 440
pF1KB6 YDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY
:::::: .:.:..:. ..: :: :::::: : ..:.:::::::::
XP_016 YDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY
320 330 340 350 360
>>XP_016865831 (OMIM: 610487) PREDICTED: KH domain-conta (316 aa)
initn: 934 init1: 789 opt: 1166 Z-score: 659.1 bits: 130.6 E(85289): 5.7e-30
Smith-Waterman score: 1166; 61.2% identity (78.5% similar) in 317 aa overlap (97-399:1-305)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : ::
XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYG
:::: :.:::: . :: : .:..::. :. :. : :
XP_016 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRY
260 270 280 290 300 310
420 430 440
pF1KB6 QDDWNGTRPSLKAPPARPVKGAYREHPYGRY
443 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:33:46 2016 done: Sun Nov 6 23:33:48 2016
Total Scan time: 11.390 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]