Result of FASTA (omim) for
pFN21AB6594
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6594, 406 aa
1>>>pF1KB6594 406 - 406 aa - 406 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4272+/-0.000397; mu= 15.5534+/- 0.025
mean_var=210.3992+/-46.531, 0's: 0 Z-trim(119.6): 292 B-trim: 3247 in 2/49
Lambda= 0.088420
statistics sampled from 33441 (33804) to 33441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.396), width: 16
Scan time: 6.150
The best scores are: opt bits E(85289)
NP_058520 (OMIM: 602310) RNA-binding motif, single ( 406) 2734 361.3 2.4e-99
NP_002888 (OMIM: 602310) RNA-binding motif, single ( 403) 2701 357.1 4.3e-98
XP_016860115 (OMIM: 602310) PREDICTED: RNA-binding ( 402) 2682 354.7 2.3e-97
XP_005246794 (OMIM: 602310) PREDICTED: RNA-binding ( 422) 2058 275.1 2.2e-73
XP_005246795 (OMIM: 602310) PREDICTED: RNA-binding ( 421) 2039 272.7 1.2e-72
XP_005246797 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 2021 270.4 5.7e-72
NP_055298 (OMIM: 605786) RNA-binding motif, single ( 420) 1993 266.8 6.8e-71
NP_001171182 (OMIM: 605786) RNA-binding motif, sin ( 421) 1993 266.8 6.8e-71
XP_016861668 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1974 264.4 3.7e-70
NP_001003793 (OMIM: 605786) RNA-binding motif, sin ( 437) 1922 257.8 3.7e-68
XP_016861667 (OMIM: 605786) PREDICTED: RNA-binding ( 435) 1903 255.4 2e-67
XP_005265117 (OMIM: 605786) PREDICTED: RNA-binding ( 436) 1903 255.4 2e-67
XP_005246798 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 1881 252.6 1.4e-66
XP_005246796 (OMIM: 602310) PREDICTED: RNA-binding ( 420) 1877 252.0 1.9e-66
XP_006719607 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 1831 246.2 1.1e-64
NP_002889 (OMIM: 602387) RNA-binding motif, single ( 407) 1831 246.2 1.1e-64
XP_011536942 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 1831 246.2 1.1e-64
XP_016875264 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 1827 245.6 1.5e-64
XP_016861669 (OMIM: 605786) PREDICTED: RNA-binding ( 404) 1746 235.3 2e-61
XP_005269118 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 1745 235.2 2.2e-61
XP_006719606 (OMIM: 602387) PREDICTED: RNA-binding ( 429) 1742 234.8 3e-61
XP_005265119 (OMIM: 605786) PREDICTED: RNA-binding ( 419) 1737 234.2 4.6e-61
XP_005265118 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1737 234.2 4.6e-61
XP_016861670 (OMIM: 605786) PREDICTED: RNA-binding ( 403) 1727 232.9 1.1e-60
NP_001003792 (OMIM: 605786) RNA-binding motif, sin ( 419) 1718 231.8 2.5e-60
XP_011536941 (OMIM: 602387) PREDICTED: RNA-binding ( 414) 1640 221.8 2.4e-57
XP_005269117 (OMIM: 602387) PREDICTED: RNA-binding ( 419) 1640 221.8 2.4e-57
XP_005269116 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 1640 221.9 2.5e-57
XP_006719605 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 1640 221.9 2.5e-57
XP_006719604 (OMIM: 602387) PREDICTED: RNA-binding ( 477) 1640 221.9 2.6e-57
XP_011536939 (OMIM: 602387) PREDICTED: RNA-binding ( 458) 1636 221.4 3.7e-57
XP_016861671 (OMIM: 605786) PREDICTED: RNA-binding ( 370) 1601 216.8 7.2e-56
NP_001171183 (OMIM: 605786) RNA-binding motif, sin ( 433) 1488 202.4 1.7e-51
XP_011536940 (OMIM: 602387) PREDICTED: RNA-binding ( 430) 1391 190.1 9.1e-48
XP_005265122 (OMIM: 605786) PREDICTED: RNA-binding ( 328) 1226 168.9 1.7e-41
XP_005265120 (OMIM: 605786) PREDICTED: RNA-binding ( 342) 1222 168.4 2.5e-41
XP_011536944 (OMIM: 602387) PREDICTED: RNA-binding ( 352) 1102 153.1 1e-36
XP_005269123 (OMIM: 602387) PREDICTED: RNA-binding ( 214) 889 125.6 1.2e-28
XP_016875267 (OMIM: 602387) PREDICTED: RNA-binding ( 237) 796 113.8 4.6e-25
XP_016875265 (OMIM: 602387) PREDICTED: RNA-binding ( 307) 758 109.1 1.5e-23
XP_016875266 (OMIM: 602387) PREDICTED: RNA-binding ( 296) 751 108.2 2.8e-23
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 423 66.5 1.3e-10
XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 422 66.4 1.4e-10
XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 420 66.1 1.6e-10
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 420 66.1 1.6e-10
XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 419 66.0 1.8e-10
XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 419 66.0 1.8e-10
XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 419 66.0 1.8e-10
XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 419 66.0 1.8e-10
XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 419 66.0 1.8e-10
>>NP_058520 (OMIM: 602310) RNA-binding motif, single-str (406 aa)
initn: 2734 init1: 2734 opt: 2734 Z-score: 1904.7 bits: 361.3 E(85289): 2.4e-99
Smith-Waterman score: 2734; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
310 320 330 340 350 360
370 380 390 400
pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
::::::::::::::::::::::::::::::::::::::::::::::
NP_058 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
370 380 390 400
>>NP_002888 (OMIM: 602310) RNA-binding motif, single-str (403 aa)
initn: 2703 init1: 1695 opt: 2701 Z-score: 1882.0 bits: 357.1 E(85289): 4.3e-98
Smith-Waterman score: 2701; 99.3% identity (99.3% similar) in 406 aa overlap (1-406:1-403)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
250 260 270 280 290
310 320 330 340 350 360
pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
300 310 320 330 340 350
370 380 390 400
pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
360 370 380 390 400
>>XP_016860115 (OMIM: 602310) PREDICTED: RNA-binding mot (402 aa)
initn: 2521 init1: 1513 opt: 2682 Z-score: 1868.9 bits: 354.7 E(85289): 2.3e-97
Smith-Waterman score: 2682; 99.0% identity (99.0% similar) in 406 aa overlap (1-406:1-402)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 MGKVWKQQMYPQYATYYYPQYLQAK-SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
300 310 320 330 340 350
370 380 390 400
pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK
360 370 380 390 400
>>XP_005246794 (OMIM: 602310) PREDICTED: RNA-binding mot (422 aa)
initn: 2025 init1: 2025 opt: 2058 Z-score: 1438.5 bits: 275.1 E(85289): 2.2e-73
Smith-Waterman score: 2692; 96.2% identity (96.2% similar) in 422 aa overlap (1-406:1-422)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
250 260 270 280 290 300
310 320 330 340
pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
: :::::::::::::::::::::::::::::::::::::::::::
XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
370 380 390 400 410 420
pF1KB6 NK
::
XP_005 NK
>>XP_005246795 (OMIM: 602310) PREDICTED: RNA-binding mot (421 aa)
initn: 1843 init1: 1843 opt: 2039 Z-score: 1425.4 bits: 272.7 E(85289): 1.2e-72
Smith-Waterman score: 2673; 96.0% identity (96.0% similar) in 422 aa overlap (1-406:1-421)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_005 MGKVWKQQMYPQYATYYYPQYLQAK-SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
240 250 260 270 280 290
310 320 330 340
pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
: :::::::::::::::::::::::::::::::::::::::::::
XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
360 370 380 390 400 410
pF1KB6 NK
::
XP_005 NK
420
>>XP_005246797 (OMIM: 602310) PREDICTED: RNA-binding mot (419 aa)
initn: 2406 init1: 1695 opt: 2021 Z-score: 1413.0 bits: 270.4 E(85289): 5.7e-72
Smith-Waterman score: 2659; 95.5% identity (95.5% similar) in 422 aa overlap (1-406:1-419)
10 20 30 40 50 60
pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
250 260 270 280 290
310 320 330 340
pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
: :::::::::::::::::::::::::::::::::::::::::::
XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP
360 370 380 390 400 410
pF1KB6 NK
::
XP_005 NK
>>NP_055298 (OMIM: 605786) RNA-binding motif, single-str (420 aa)
initn: 1865 init1: 1217 opt: 1993 Z-score: 1393.7 bits: 266.8 E(85289): 6.8e-71
Smith-Waterman score: 2037; 73.8% identity (86.9% similar) in 427 aa overlap (1-406:1-420)
10 20 30 40 50
pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ
::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .:
NP_055 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK
::::::::::::: ::::::.::::::::::::::::::.::.:::::::::::::::::
NP_055 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG
::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..:
NP_055 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI
.::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .::
NP_055 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS
::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: ::::
NP_055 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP
.::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.:::::
NP_055 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT
300 310 320 330 340 350
360 370 380 390
pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP-
:.. :::.:.:::. . ::: .: ..::::: .::.:::.:.:
NP_055 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA
360 370 380 390 400 410
400
pF1KB6 YTFQPNK
:..: .:
NP_055 YSYQQSK
420
>>NP_001171182 (OMIM: 605786) RNA-binding motif, single- (421 aa)
initn: 1865 init1: 1217 opt: 1993 Z-score: 1393.7 bits: 266.8 E(85289): 6.8e-71
Smith-Waterman score: 2037; 73.8% identity (86.9% similar) in 427 aa overlap (1-406:1-420)
10 20 30 40 50
pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ
::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .:
NP_001 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK
::::::::::::: ::::::.::::::::::::::::::.::.:::::::::::::::::
NP_001 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG
::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..:
NP_001 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI
.::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .::
NP_001 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS
::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: ::::
NP_001 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP
.::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.:::::
NP_001 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT
300 310 320 330 340 350
360 370 380 390
pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP-
:.. :::.:.:::. . ::: .: ..::::: .::.:::.:.:
NP_001 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA
360 370 380 390 400 410
400
pF1KB6 YTFQPNK
:..: .:
NP_001 YSYQQSKP
420
>>XP_016861668 (OMIM: 605786) PREDICTED: RNA-binding mot (420 aa)
initn: 1859 init1: 1211 opt: 1974 Z-score: 1380.6 bits: 264.4 E(85289): 3.7e-70
Smith-Waterman score: 2018; 73.5% identity (86.7% similar) in 427 aa overlap (1-406:1-419)
10 20 30 40 50
pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ
::: : :::::: :::::.:::.: : .:: ::::::::::.::.::::. ::. .:
XP_016 MGKRLDQPQMYPQY-TYYYPHYLQTK-SYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK
::::::::::::: ::::::.::::::::::::::::::.::.:::::::::::::::::
XP_016 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG
::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..:
XP_016 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI
.::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .::
XP_016 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS
::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: ::::
XP_016 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP
.::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.:::::
XP_016 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT
300 310 320 330 340 350
360 370 380 390
pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP-
:.. :::.:.:::. . ::: .: ..::::: .::.:::.:.:
XP_016 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA
360 370 380 390 400 410
400
pF1KB6 YTFQPNK
:..: .:
XP_016 YSYQQSKP
420
>>NP_001003793 (OMIM: 605786) RNA-binding motif, single- (437 aa)
initn: 1526 init1: 1217 opt: 1922 Z-score: 1344.6 bits: 257.8 E(85289): 3.7e-68
Smith-Waterman score: 1995; 71.1% identity (83.7% similar) in 443 aa overlap (1-406:1-436)
10 20 30 40 50
pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ
::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .:
NP_001 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK
::::::::::::: ::::::.::::::::::::::::::.::.:::::::::::::::::
NP_001 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG
::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..:
NP_001 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI
.::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .::
NP_001 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS
::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: ::::
NP_001 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT---
.::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.:::
NP_001 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQS
300 310 320 330 340 350
360 370 380
pF1KB6 -------------YMPATSAMQGAYLPQYAHMQTTAVPVE----------------EASG
:: :.. :::.:.:::. . ::: .: ..::
NP_001 QDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSG
360 370 380 390 400 410
390 400
pF1KB6 QQQ-VAVETSNDHSP-YTFQPNK
::: .::.:::.:.: :..: .:
NP_001 QQQQIAVDTSNEHAPAYSYQQSKP
420 430
406 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:35:34 2016 done: Tue Nov 8 01:35:35 2016
Total Scan time: 6.150 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]