FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6361, 169 aa
  1>>>pF1KB6361 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7367+/-0.000659; mu= 1.9880+/- 0.040
 mean_var=136.0400+/-26.980, 0's: 0 Z-trim(115.9): 4  B-trim: 7 in 1/50
 Lambda= 0.109962
 statistics sampled from 16442 (16446) to 16442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.505), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS58069.1 IL15RA gene_id:3601|Hs108|chr10        ( 231)  915 155.2 2.4e-38
CCDS7074.1 IL15RA gene_id:3601|Hs108|chr10         ( 267)  915 155.3 2.7e-38
CCDS73065.1 IL15RA gene_id:3601|Hs108|chr10        ( 353)  915 155.3 3.4e-38
CCDS7075.2 IL15RA gene_id:3601|Hs108|chr10         ( 234)  898 152.5 1.6e-37


>>CCDS58069.1 IL15RA gene_id:3601|Hs108|chr10             (231 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 802.0  bits: 155.2 E(32554): 2.4e-38
Smith-Waterman score: 915; 97.2% identity (99.3% similar) in 144 aa overlap (26-169:88-231)

                    10        20        30        40        50     
pF1KB6      MAPRRARGCRTLGLPALLLLLLLRPPATREPAASSPSSNNTAATTAAIVPGSQLM
                                     :. .::::::::::::::::::::::::::
CCDS58 IRDPALVHQRPAPPSTVTTAGVTPQPESLSPSGKEPAASSPSSNNTAATTAAIVPGSQLM
        60        70        80        90       100       110       

          60        70        80        90       100       110     
pF1KB6 PSKSPSTGTTEISSHESSHGTPSQTTAKTWELTASASHQPPGVYPQGHSDTTVAISTSTV
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS58 PSKSPSTGTTEISSHESSHGTPSQTTAKNWELTASASHQPPGVYPQGHSDTTVAISTSTV
       120       130       140       150       160       170       

         120       130       140       150       160         
pF1KB6 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
       180       190       200       210       220       230 

>>CCDS7074.1 IL15RA gene_id:3601|Hs108|chr10              (267 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 801.0  bits: 155.3 E(32554): 2.7e-38
Smith-Waterman score: 915; 97.2% identity (99.3% similar) in 144 aa overlap (26-169:124-267)

                    10        20        30        40        50     
pF1KB6      MAPRRARGCRTLGLPALLLLLLLRPPATREPAASSPSSNNTAATTAAIVPGSQLM
                                     :. .::::::::::::::::::::::::::
CCDS70 IRDPALVHQRPAPPSTVTTAGVTPQPESLSPSGKEPAASSPSSNNTAATTAAIVPGSQLM
           100       110       120       130       140       150   

          60        70        80        90       100       110     
pF1KB6 PSKSPSTGTTEISSHESSHGTPSQTTAKTWELTASASHQPPGVYPQGHSDTTVAISTSTV
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS70 PSKSPSTGTTEISSHESSHGTPSQTTAKNWELTASASHQPPGVYPQGHSDTTVAISTSTV
           160       170       180       190       200       210   

         120       130       140       150       160         
pF1KB6 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
           220       230       240       250       260       

>>CCDS73065.1 IL15RA gene_id:3601|Hs108|chr10             (353 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 799.2  bits: 155.3 E(32554): 3.4e-38
Smith-Waterman score: 915; 97.2% identity (99.3% similar) in 144 aa overlap (26-169:210-353)

                    10        20        30        40        50     
pF1KB6      MAPRRARGCRTLGLPALLLLLLLRPPATREPAASSPSSNNTAATTAAIVPGSQLM
                                     :. .::::::::::::::::::::::::::
CCDS73 IRDPALVHQRPAPPSTVTTAGVTPQPESLSPSGKEPAASSPSSNNTAATTAAIVPGSQLM
     180       190       200       210       220       230         

          60        70        80        90       100       110     
pF1KB6 PSKSPSTGTTEISSHESSHGTPSQTTAKTWELTASASHQPPGVYPQGHSDTTVAISTSTV
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS73 PSKSPSTGTTEISSHESSHGTPSQTTAKNWELTASASHQPPGVYPQGHSDTTVAISTSTV
     240       250       260       270       280       290         

         120       130       140       150       160         
pF1KB6 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
     300       310       320       330       340       350   

>>CCDS7075.2 IL15RA gene_id:3601|Hs108|chr10              (234 aa)
 initn: 1077 init1: 898 opt: 898  Z-score: 787.3  bits: 152.5 E(32554): 1.6e-37
Smith-Waterman score: 898; 98.6% identity (100.0% similar) in 140 aa overlap (30-169:95-234)

                10        20        30        40        50         
pF1KB6  MAPRRARGCRTLGLPALLLLLLLRPPATREPAASSPSSNNTAATTAAIVPGSQLMPSKS
                                     .:::::::::::::::::::::::::::::
CCDS70 RKAGTSSLTECVLNKATNVAHWTTPSLKCIKPAASSPSSNNTAATTAAIVPGSQLMPSKS
           70        80        90       100       110       120    

      60        70        80        90       100       110         
pF1KB6 PSTGTTEISSHESSHGTPSQTTAKTWELTASASHQPPGVYPQGHSDTTVAISTSTVLLCG
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS70 PSTGTTEISSHESSHGTPSQTTAKNWELTASASHQPPGVYPQGHSDTTVAISTSTVLLCG
          130       140       150       160       170       180    

     120       130       140       150       160         
pF1KB6 LSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL
          190       200       210       220       230    




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:00:27 2016 done: Sun Nov  6 22:00:27 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]