Result of FASTA (ccds) for
pFN21AB6273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6273, 779 aa
1>>>pF1KB6273 779 - 779 aa - 779 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6480+/-0.000907; mu= 0.3903+/- 0.055
mean_var=208.6965+/-43.057, 0's: 0 Z-trim(113.1): 32 B-trim: 371 in 1/54
Lambda= 0.088780
statistics sampled from 13725 (13754) to 13725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.422), width: 16
Scan time: 4.100
The best scores are: opt bits E(32554)
CCDS31959.1 SUPT20H gene_id:55578|Hs108|chr13 ( 779) 5152 672.9 5.4e-193
CCDS9362.1 SUPT20H gene_id:55578|Hs108|chr13 ( 733) 4638 607.0 3.4e-173
CCDS61311.1 SUPT20H gene_id:55578|Hs108|chr13 ( 811) 3542 466.7 6.7e-131
>>CCDS31959.1 SUPT20H gene_id:55578|Hs108|chr13 (779 aa)
initn: 5152 init1: 5152 opt: 5152 Z-score: 3578.3 bits: 672.9 E(32554): 5.4e-193
Smith-Waterman score: 5152; 99.9% identity (100.0% similar) in 779 aa overlap (1-779:1-779)
10 20 30 40 50 60
pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMAN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 SAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAMQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 AASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB6 PGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSVENRPEQSLPQQRF
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS31 PGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSAENRPEQSLPQQRF
670 680 690 700 710 720
730 740 750 760 770
pF1KB6 QLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF
730 740 750 760 770
>>CCDS9362.1 SUPT20H gene_id:55578|Hs108|chr13 (733 aa)
initn: 4729 init1: 4294 opt: 4638 Z-score: 3222.9 bits: 607.0 E(32554): 3.4e-173
Smith-Waterman score: 4638; 96.7% identity (98.4% similar) in 729 aa overlap (1-728:1-729)
10 20 30 40 50
pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVK-KLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS93 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKQKLRR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 NVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 LPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 ITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 RYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 LAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB6 DPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKC
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB6 PVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB6 YFTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YFTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB6 NSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAM
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB6 QAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQ
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB6 QPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSVENRPEQSLPQQR
::::::::::::::::::::::::::::::::::::::::... :.. .. .: ..
CCDS93 QPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAAVAILAASNGYGSSSSTNSS
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB6 FQLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF
:::..:
CCDS93 ATSSSAYRQPVKK
730
>>CCDS61311.1 SUPT20H gene_id:55578|Hs108|chr13 (811 aa)
initn: 4685 init1: 3542 opt: 3542 Z-score: 2463.5 bits: 466.7 E(32554): 6.7e-131
Smith-Waterman score: 4482; 87.4% identity (88.8% similar) in 807 aa overlap (1-728:1-807)
10 20 30 40 50 60
pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY
430 440 450 460 470 480
490 500 510 520 530
pF1KB6 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQR---------
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRSGTPKPSTP
490 500 510 520 530 540
pF1KB6 ------------------------------------------------------------
CCDS61 TPTPSSTPHPPDAQSSTPSTPSATPTPQDSGFTPQPTLLTQFAQQQRSLSQAMPVTTIPL
550 560 570 580 590 600
540 550 560 570 580
pF1KB6 ----------TTATQVMANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 STMVTSITPGTTATQVMANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINL
610 620 630 640 650 660
590 600 610 620 630 640
pF1KB6 SGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 SGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQ
670 680 690 700 710 720
650 660 670 680 690 700
pF1KB6 LSQFTPQQPQQPTTCSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS61 LSQFTPQQPQQPTTCSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAAV
730 740 750 760 770 780
710 720 730 740 750 760
pF1KB6 SQLGSVENRPEQSLPQQRFQLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHT
. :.. .. .: .. :::..:
CCDS61 AILAASNGYGSSSSTNSSATSSSAYRQPVKK
790 800 810
779 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:14:12 2016 done: Mon Nov 7 00:14:12 2016
Total Scan time: 4.100 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]