FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6265, 690 aa
  1>>>pF1KB6265 690 - 690 aa - 690 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6533+/-0.000989; mu= 14.5895+/- 0.060
 mean_var=110.7151+/-22.176, 0's: 0 Z-trim(107.6): 28  B-trim: 0 in 0/52
 Lambda= 0.121891
 statistics sampled from 9654 (9670) to 9654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.297), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(32554)
CCDS35342.1 HDX gene_id:139324|Hs108|chrX          ( 690) 4538 809.2       0
CCDS55456.1 HDX gene_id:139324|Hs108|chrX          ( 632) 4151 741.2 1.1e-213


>>CCDS35342.1 HDX gene_id:139324|Hs108|chrX               (690 aa)
 initn: 4538 init1: 4538 opt: 4538  Z-score: 4317.1  bits: 809.2 E(32554):    0
Smith-Waterman score: 4538; 100.0% identity (100.0% similar) in 690 aa overlap (1-690:1-690)

               10        20        30        40        50        60
pF1KB6 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE
              610       620       630       640       650       660

              670       680       690
pF1KB6 EMDFNHASLEPDDTSFSVSSLSEKNVSESL
       ::::::::::::::::::::::::::::::
CCDS35 EMDFNHASLEPDDTSFSVSSLSEKNVSESL
              670       680       690

>>CCDS55456.1 HDX gene_id:139324|Hs108|chrX               (632 aa)
 initn: 4151 init1: 4151 opt: 4151  Z-score: 3949.8  bits: 741.2 E(32554): 1.1e-213
Smith-Waterman score: 4151; 100.0% identity (100.0% similar) in 632 aa overlap (59-690:1-632)

       30        40        50        60        70        80        
pF1KB6 NCFQLILQCAQETKLDFSVVRTWVGNKRRKMSSKNSESGTATTGTSLSAPDITVRNVVNI
                                     ::::::::::::::::::::::::::::::
CCDS55                               MSSKNSESGTATTGTSLSAPDITVRNVVNI
                                             10        20        30

       90       100       110       120       130       140        
pF1KB6 ARPSSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARPSSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTE
               40        50        60        70        80        90

      150       160       170       180       190       200        
pF1KB6 FQLHIPVQRQVAHCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQLHIPVQRQVAHCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMT
              100       110       120       130       140       150

      210       220       230       240       250       260        
pF1KB6 VPQKPSVCHRPCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPQKPSVCHRPCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSL
              160       170       180       190       200       210

      270       280       290       300       310       320        
pF1KB6 AVSDYPQRILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVSDYPQRILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYE
              220       230       240       250       260       270

      330       340       350       360       370       380        
pF1KB6 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS
              280       290       300       310       320       330

      390       400       410       420       430       440        
pF1KB6 NTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLA
              340       350       360       370       380       390

      450       460       470       480       490       500        
pF1KB6 TLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP
              400       410       420       430       440       450

      510       520       530       540       550       560        
pF1KB6 ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARAHK
              460       470       480       490       500       510

      570       580       590       600       610       620        
pF1KB6 EEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFK
              520       530       540       550       560       570

      630       640       650       660       670       680        
pF1KB6 LQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLSEKNVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLSEKNVSE
              580       590       600       610       620       630

      690
pF1KB6 SL
       ::
CCDS55 SL
         




690 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:08:26 2016 done: Sun Nov  6 03:08:27 2016
 Total Scan time:  3.970 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]