FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6165, 648 aa
  1>>>pF1KB6165 648 - 648 aa - 648 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8058+/-0.000949; mu= -3.2834+/- 0.057
 mean_var=345.4716+/-70.499, 0's: 0 Z-trim(117.3): 75  B-trim: 187 in 1/51
 Lambda= 0.069003
 statistics sampled from 17954 (18030) to 17954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.554), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(32554)
CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17         ( 648) 4626 474.2 2.4e-133
CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12        ( 517)  784 91.7 2.7e-18


>>CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17              (648 aa)
 initn: 4626 init1: 4626 opt: 4626  Z-score: 2507.6  bits: 474.2 E(32554): 2.4e-133
Smith-Waterman score: 4626; 100.0% identity (100.0% similar) in 648 aa overlap (1-648:1-648)

               10        20        30        40        50        60
pF1KB6 MVSLPPPQSDVTLPGPTRLEGERQGDLMQAPGLPGSPAPQSKHAGFSCSSFVSDGPPERT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVSLPPPQSDVTLPGPTRLEGERQGDLMQAPGLPGSPAPQSKHAGFSCSSFVSDGPPERT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PSLPPHSPRIASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGFGFEEAAASSPGRFLKGSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSLPPHSPRIASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGFGFEEAAASSPGRFLKGSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 APFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CNGLPYPSQEHGPQVLGSEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFHQYSPGGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CNGLPYPSQEHGPQVLGSEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFHQYSPGGGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 YPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 MTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKIDKMQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKIDKMQEEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 QKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 PPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLPDGDLGTDLDAINPSLTDFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLPDGDLGTDLDAINPSLTDFD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 FQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTETGSGAGDLAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTETGSGAGDLAAP
              550       560       570       580       590       600

              610       620       630       640        
pF1KB6 GSGGSGALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSGGSGALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA
              610       620       630       640        

>>CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12             (517 aa)
 initn: 922 init1: 735 opt: 784  Z-score: 441.9  bits: 91.7 E(32554): 2.7e-18
Smith-Waterman score: 982; 40.8% identity (59.6% similar) in 510 aa overlap (152-647:77-516)

             130       140       150       160       170       180 
pF1KB6 PFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWC
                                     :: : .  .. :  :    .: : .. :  
CCDS91 SWLTAVDVPRLQQMASGRVDLGGPCVPHPHPGALAGVADLHVG-ATPSPLLHGPAGMAP-
         50        60        70        80         90       100     

             190       200        210       220        230         
pF1KB6 NGLPYPSQEHGPQVLGSEVKVKPPVL-ESGAGMFCYQPPLQHMYC-SSQPPFH-----QY
        :.:      :: .   .   . ::  . ..:.   .::  :.:  ..:: :      : 
CCDS91 RGMP----GLGPITGHRDSMSQFPVGGQPSSGL--QDPP--HLYSPATQPQFPLPPGAQQ
              110       120       130           140       150      

          240       250       260       270       280       290    
pF1KB6 SPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPV
        :  : :  :.     :   ..: ..: . :   .:::::::: :: :::::::::::::
CCDS91 CPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPV
        160       170       180       190       200       210      

          300       310       320       330       340       350    
pF1KB6 SEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKID
       ::::.:: ::::::::::::::::::::::::::::::::: ..::::::::::: :.::
CCDS91 SEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARID
        220       230       240       250       260       270      

          360       370       380       390       400       410    
pF1KB6 KMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLA
       ::.::..::::::  :...:::.:::::.::.:. :.       :  ::  :  :  :. 
CCDS91 KMEEEMHKWKRKDLAAIHRSMANPEELDKLISDRPES-------CRRPGKPGE-PEAPVL
        280       290       300       310              320         

          420       430       440       450       460       470    
pF1KB6 PPAGLSPPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQ
         :      :.   : . .: . ::. : .  .:       :: .              :
CCDS91 THATTVAVAHGCL-AVSQLPPQ-PLMTLSLQSVP-------LHHQV-------------Q
      330       340         350       360                          

          480       490       500          510         520         
pF1KB6 PDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAE---PSPA--RTMHDTLLPDGDLGTDL
       :..::       .: ::: ::.::: :.   :.    : ::  :.  : .  . :..:..
CCDS91 PQAHL-------AP-DSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEV
        370               380       390       400       410        

     530       540       550       560       570       580         
pF1KB6 DAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTE
       ::..::. :: .::::::..::....:: :   ..:: . ..                  
CCDS91 DALDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDL------------------
      420       430       440       450       460                  

     590       600        610       620       630        640       
pF1KB6 TGSGAGDLAAPGSGGSG-ALGDLHLTTLYSAFMELEPTPPTAPAGPSVYL-SPSSKPVAL
          ::. :. :.::::  .. ::..: ::.:.   . .  .. .. : :: . ..::.::
CCDS91 ---GASGLT-PASGGSDQSFPDLQVTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIAL
                  470       480       490       500       510      

        
pF1KB6 A
        
CCDS91 L
        




648 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:02:41 2016 done: Mon Nov  7 04:02:42 2016
 Total Scan time:  4.860 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]