FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5904, 525 aa
  1>>>pF1KB5904     525 - 525 aa - 525 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7556+/-0.000975; mu= 5.3596+/- 0.059
 mean_var=272.6446+/-55.270, 0's: 0 Z-trim(115.1): 46  B-trim: 350 in 1/51
 Lambda= 0.077674
 statistics sampled from 15656 (15701) to 15656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.482), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS3280.1 HRG gene_id:3273|Hs108|chr3             ( 525) 3912 451.6  1e-126


>>CCDS3280.1 HRG gene_id:3273|Hs108|chr3                  (525 aa)
 initn: 3912 init1: 3912 opt: 3912  Z-score: 2388.4  bits: 451.6 E(32554): 1e-126
Smith-Waterman score: 3912; 99.4% identity (99.6% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB5 MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ERVARVRGGEGTGYFVDFSVRNCSRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS32 ERVARVRGGEGTGYFVDFSVRNCPRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRRSHNNNSSDLHPHKHHSHEQH
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS32 PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHNNNSSDLHPHKHHSHEQH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 PHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQDYGPCDPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQDYGPCDPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PHNQGHCCHGHGPPPGHLRRRGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PHNQGHCCHGHGPPPGHLRRRGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSF
              430       440       450       460       470       480

              490       500       510       520     
pF1KB5 PLPHHKHPLKPDIQPFPQSVSESCPGKFKSGFPQVSMFFTHTFPK
       :::::::::::: ::::::::::::::::::::::::::::::::
CCDS32 PLPHHKHPLKPDNQPFPQSVSESCPGKFKSGFPQVSMFFTHTFPK
              490       500       510       520     




525 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jan 30 11:05:00 2018 done: Tue Jan 30 11:05:00 2018
 Total Scan time:  1.670 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]