Result of FASTA (omim) for
pFN21AB5820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5820, 531 aa
1>>>pF1KB5820 531 - 531 aa - 531 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5915+/-0.000441; mu= -2.2421+/- 0.027
mean_var=466.0510+/-96.537, 0's: 0 Z-trim(123.0): 12 B-trim: 785 in 1/60
Lambda= 0.059410
statistics sampled from 41947 (41962) to 41947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.492), width: 16
Scan time: 11.760
The best scores are: opt bits E(85289)
NP_001091896 (OMIM: 601736) SWI/SNF-related matrix ( 531) 3639 326.4 1.4e-88
NP_001317369 (OMIM: 601736) SWI/SNF-related matrix ( 483) 3119 281.7 3.4e-75
NP_001317368 (OMIM: 601736) SWI/SNF-related matrix ( 456) 3084 278.7 2.6e-74
NP_003067 (OMIM: 601735) SWI/SNF-related matrix-as ( 515) 2164 199.9 1.5e-50
NP_003069 (OMIM: 601737) SWI/SNF-related matrix-as ( 470) 1855 173.4 1.4e-42
NP_001003802 (OMIM: 601737) SWI/SNF-related matrix ( 470) 1855 173.4 1.4e-42
NP_001003801 (OMIM: 601737) SWI/SNF-related matrix ( 483) 1842 172.3 3e-42
XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 381) 1686 158.8 2.7e-38
NP_620710 (OMIM: 601735) SWI/SNF-related matrix-as ( 474) 1688 159.1 2.8e-38
XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 318) 1606 151.8 2.8e-36
XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 474) 1560 148.1 5.6e-35
XP_011536997 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 265) 806 83.2 1.1e-15
>>NP_001091896 (OMIM: 601736) SWI/SNF-related matrix-ass (531 aa)
initn: 3639 init1: 3639 opt: 3639 Z-score: 1711.4 bits: 326.4 E(85289): 1.4e-88
Smith-Waterman score: 3639; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
430 440 450 460 470 480
490 500 510 520 530
pF1KB5 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
490 500 510 520 530
>>NP_001317369 (OMIM: 601736) SWI/SNF-related matrix-ass (483 aa)
initn: 3119 init1: 3119 opt: 3119 Z-score: 1471.0 bits: 281.7 E(85289): 3.4e-75
Smith-Waterman score: 3119; 99.6% identity (99.8% similar) in 463 aa overlap (69-531:21-483)
40 50 60 70 80 90
pF1KB5 GPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG
:. :::::::::::::::::::::::::::
NP_001 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFG
10 20 30 40 50
100 110 120 130 140 150
pF1KB5 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB5 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB5 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP
180 190 200 210 220 230
280 290 300 310 320 330
pF1KB5 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY
240 250 260 270 280 290
340 350 360 370 380 390
pF1KB5 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN
300 310 320 330 340 350
400 410 420 430 440 450
pF1KB5 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML
360 370 380 390 400 410
460 470 480 490 500 510
pF1KB5 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR
420 430 440 450 460 470
520 530
pF1KB5 RQELEQVLGIRLT
:::::::::::::
NP_001 RQELEQVLGIRLT
480
>>NP_001317368 (OMIM: 601736) SWI/SNF-related matrix-ass (456 aa)
initn: 3084 init1: 3084 opt: 3084 Z-score: 1455.1 bits: 278.7 E(85289): 2.6e-74
Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 456 aa overlap (76-531:1-456)
50 60 70 80 90 100
pF1KB5 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
::::::::::::::::::::::::::::::
NP_001 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
10 20 30
110 120 130 140 150 160
pF1KB5 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB5 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB5 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ
340 350 360 370 380 390
470 480 490 500 510 520
pF1KB5 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV
400 410 420 430 440 450
530
pF1KB5 LGIRLT
::::::
NP_001 LGIRLT
>>NP_003067 (OMIM: 601735) SWI/SNF-related matrix-associ (515 aa)
initn: 2222 init1: 1539 opt: 2164 Z-score: 1028.3 bits: 199.9 E(85289): 1.5e-50
Smith-Waterman score: 2208; 63.8% identity (80.0% similar) in 544 aa overlap (1-531:1-515)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
:..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .:
NP_003 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
10 20 30 40 50
70 80 90 100 110
pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
NP_003 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
60 70 80 90 100
120 130 140 150 160 170
pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
: : . .: :. :..:::::.::::::::::::::::::::::::::::: :
NP_003 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
NP_003 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
170 180 190 200 210
240 250 260 270 280
pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
::.::.: .:::::::::::::::::::.::::::::::::: :::::::::
NP_003 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
NP_003 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
NP_003 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: :
NP_003 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
:..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.::
NP_003 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
460 470 480 490 500 510
530
pF1KB5 IRLT
:: :
NP_003 IRNT
>>NP_003069 (OMIM: 601737) SWI/SNF-related matrix-associ (470 aa)
initn: 2197 init1: 1676 opt: 1855 Z-score: 885.6 bits: 173.4 E(85289): 1.4e-42
Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470)
40 50 60 70 80 90
pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP
: : . ::::: : ::: : .:::
NP_003 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP
10 20 30
100 110 120 130 140
pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD
:::. .. .:::. :. :.: ::: : ::: : ::. :. :::::::
NP_003 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF
:.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.::::::
NP_003 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
.:.: .. :: :. .::::::::::::::::::::::::::::::::::
NP_003 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
160 170 180 190 200
270 280 290 300 310 320
pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL
:.::::::::::::: :::::::::::::::::.:.::::::::.::::.::::::::::
NP_003 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL
:.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..::
NP_003 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL
270 280 290 300 310 320
390 400 410 420 430 440
pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH
::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::
NP_003 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP
:::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: :::::
NP_003 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP
390 400 410 420 430 440
510 520 530
pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:.::::.:... :.::::::::: : .: :
NP_003 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>NP_001003802 (OMIM: 601737) SWI/SNF-related matrix-ass (470 aa)
initn: 2197 init1: 1676 opt: 1855 Z-score: 885.6 bits: 173.4 E(85289): 1.4e-42
Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470)
40 50 60 70 80 90
pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP
: : . ::::: : ::: : .:::
NP_001 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP
10 20 30
100 110 120 130 140
pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD
:::. .. .:::. :. :.: ::: : ::: : ::. :. :::::::
NP_001 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF
:.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.::::::
NP_001 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
.:.: .. :: :. .::::::::::::::::::::::::::::::::::
NP_001 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
160 170 180 190 200
270 280 290 300 310 320
pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL
:.::::::::::::: :::::::::::::::::.:.::::::::.::::.::::::::::
NP_001 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL
:.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..::
NP_001 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL
270 280 290 300 310 320
390 400 410 420 430 440
pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH
::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::
NP_001 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP
:::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: :::::
NP_001 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP
390 400 410 420 430 440
510 520 530
pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:.::::.:... :.::::::::: : .: :
NP_001 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>NP_001003801 (OMIM: 601737) SWI/SNF-related matrix-ass (483 aa)
initn: 2191 init1: 1676 opt: 1842 Z-score: 879.5 bits: 172.3 E(85289): 3e-42
Smith-Waterman score: 2246; 71.3% identity (85.5% similar) in 470 aa overlap (73-531:27-483)
50 60 70 80 90 100
pF1KB5 RGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP
:::: : ::: : .::: :::. ..
NP_001 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPP-GSPYMGSPA
10 20 30 40 50
110 120 130 140 150
pF1KB5 LRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIREL
.:::. :. :.: ::: : ::: : ::. :. ::::::::.::::::::
NP_001 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIREL
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB5 VPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DS
::::::::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. ::
NP_001 VPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDS
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB5 AGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHL
:. .:::::::::::::::::::::::::::::::::::.::::::::
NP_001 DGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHL
180 190 200 210 220
280 290 300 310 320 330
pF1KB5 VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAI
::::: :::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.::
NP_001 VEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAI
230 240 250 260 270 280
340 350 360 370 380 390
pF1KB5 MQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINH
.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: ::::::::
NP_001 VQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINH
290 300 310 320 330 340
400 410 420 430 440 450
pF1KB5 VISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLK
::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::::::::::::
NP_001 VISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLK
350 360 370 380 390 400
460 470 480 490 500 510
pF1KB5 TQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHI
::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:..
NP_001 IQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYF
410 420 430 440 450 460
520 530
pF1KB5 FAKVQQRRQELEQVLGIRLT
. :.::::::::: : .: :
NP_001 YCKIQQRRQELEQSLVVRNT
470 480
>>XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-related (381 aa)
initn: 2069 init1: 1676 opt: 1686 Z-score: 808.4 bits: 158.8 E(85289): 2.7e-38
Smith-Waterman score: 2035; 76.1% identity (90.6% similar) in 393 aa overlap (140-531:1-381)
110 120 130 140 150 160
pF1KB5 TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKL
::::.:::::::::::::::::::::::::
XP_011 MADKILPQRIRELVPESQAYMDLLAFERKL
10 20 30
170 180 190 200 210 220
pF1KB5 DQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVA
:::: :::..::::.:.:. ::::::.::::::.:.: .. :: :. .:
XP_011 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IA
40 50 60 70
230 240 250 260 270 280
pF1KB5 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQV
::::::::::::::::::::::::::::::::::.::::::::::::: :::::::::::
XP_011 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
80 90 100 110 120 130
290 300 310 320 330 340
pF1KB5 KRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGH
::::::.:.::::::::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.:
XP_011 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
140 150 160 170 180 190
350 360 370 380 390 400
pF1KB5 EREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDI
..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::.::::::::::
XP_011 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
200 210 220 230 240 250
410 420 430 440 450 460
pF1KB5 DVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI
::::..:::.:::.:: ::.:::::..:: ::::::::::::: ::::::::: ::. ..
XP_011 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
260 270 280 290 300 310
470 480 490 500 510 520
pF1KB5 QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGI
:. :::: ::::..::: ::::::::: ::::::.::::.:... :.::::::::: : .
XP_011 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
320 330 340 350 360 370
530
pF1KB5 RLT
: :
XP_011 RNT
380
>>NP_620710 (OMIM: 601735) SWI/SNF-related matrix-associ (474 aa)
initn: 1990 init1: 1056 opt: 1688 Z-score: 808.2 bits: 159.1 E(85289): 2.8e-38
Smith-Waterman score: 1899; 57.9% identity (73.0% similar) in 544 aa overlap (1-531:1-474)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
:..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .:
NP_620 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
10 20 30 40 50
70 80 90 100 110
pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
NP_620 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
60 70 80 90 100
120 130 140 150 160 170
pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
: : . .: :. :..:::::.::::::::::::::::::::::::::::: :
NP_620 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
NP_620 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
170 180 190 200 210
240 250 260 270 280
pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
::.::.: .:::::::::::::::::::.::::::::::::: :::::::::
NP_620 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
NP_620 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
NP_620 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
::::::: ::.::..:: ::..:::::.:: :
NP_620 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKT---------------------------
400 410 420
470 480 490 500 510 520
pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
.:::.::::::::: :: :::::::: :....:::::::::::.::
NP_620 --------------MTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
430 440 450 460 470
530
pF1KB5 IRLT
:: :
NP_620 IRNT
>>XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-related (318 aa)
initn: 1606 init1: 1582 opt: 1606 Z-score: 772.2 bits: 151.8 E(85289): 2.8e-36
Smith-Waterman score: 1606; 73.6% identity (89.6% similar) in 318 aa overlap (214-531:6-318)
190 200 210 220 230 240
pF1KB5 IKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS
::. : :. : . .:: . : .. ::
XP_016 MLRIPTAALPPGS-YGWRGSSWMMYVPAQ----PS
10 20 30
250 260 270 280 290 300
pF1KB5 KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLM
:::::::::::::::::::.::::::::::::: :::::::::::::::::.:.::::::
XP_016 KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLM
40 50 60 70 80 90
310 320 330 340 350 360
pF1KB5 LDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF
::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::
XP_016 LDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF
100 110 120 130 140 150
370 380 390 400 410 420
pF1KB5 SCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNF
.: ::.:::::..:..:: ::::::::::::::.::::::::::::::..:::.:::.:
XP_016 DCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSF
160 170 180 190 200 210
430 440 450 460 470 480
pF1KB5 LASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT
: ::.:::::..:: ::::::::::::: ::::::::: ::. ..:. :::: ::::..:
XP_016 LLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT
220 230 240 250 260 270
490 500 510 520 530
pF1KB5 DVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:: ::::::::: ::::::.::::.:... :.::::::::: : .: :
XP_016 DVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
280 290 300 310
531 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:37:56 2016 done: Sun Nov 6 10:37:58 2016
Total Scan time: 11.760 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]