Result of FASTA (ccds) for
pFN21AB5810
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5810, 448 aa
1>>>pF1KB5810 448 - 448 aa - 448 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4747+/-0.000732; mu= 14.0781+/- 0.045
mean_var=102.7531+/-20.304, 0's: 0 Z-trim(112.6): 123 B-trim: 12 in 1/49
Lambda= 0.126525
statistics sampled from 13243 (13369) to 13243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.411), width: 16
Scan time: 3.230
The best scores are: opt bits E(32554)
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 3017 560.7 1.1e-159
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 2276 425.4 5.7e-119
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 2276 425.4 5.8e-119
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 2227 416.5 2.9e-116
CCDS46775.1 RARB gene_id:5915|Hs108|chr3 ( 336) 2222 415.5 4.2e-116
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 2199 411.3 9.8e-115
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 2116 396.2 3.1e-110
CCDS58237.1 RARG gene_id:5916|Hs108|chr12 ( 432) 1858 349.1 5.2e-96
CCDS45671.1 RARA gene_id:5914|Hs108|chr17 ( 365) 1557 294.1 1.6e-79
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 719 141.2 2.1e-33
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 714 140.4 4.9e-33
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 712 140.0 5.7e-33
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 695 136.9 5e-32
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 693 136.5 7e-32
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 693 136.5 7.1e-32
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 693 136.5 7.5e-32
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 663 131.1 3.2e-30
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 663 131.1 3.3e-30
CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 626 124.2 2.6e-28
CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 626 124.2 2.7e-28
CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1 ( 470) 607 120.8 3e-27
CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 603 120.0 5.4e-27
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 583 116.3 5.6e-26
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 568 113.6 3.8e-25
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 567 113.4 4.4e-25
CCDS42316.1 THRA gene_id:7067|Hs108|chr17 ( 410) 538 108.1 1.7e-23
CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11 ( 422) 515 103.9 3.2e-22
CCDS2641.1 THRB gene_id:7068|Hs108|chr3 ( 461) 502 101.6 1.8e-21
CCDS58546.1 THRA gene_id:7067|Hs108|chr17 ( 451) 458 93.6 4.5e-19
CCDS11360.1 THRA gene_id:7067|Hs108|chr17 ( 490) 450 92.1 1.3e-18
CCDS58673.1 NR1H2 gene_id:7376|Hs108|chr19 ( 363) 444 90.9 2.2e-18
CCDS42593.1 NR1H2 gene_id:7376|Hs108|chr19 ( 460) 444 91.0 2.7e-18
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 425 87.5 2.3e-17
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 425 87.5 3e-17
CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 ( 579) 423 87.2 4.7e-17
CCDS45271.1 RORA gene_id:6095|Hs108|chr15 ( 468) 417 86.1 8.4e-17
CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 417 86.1 9.2e-17
CCDS10178.1 RORA gene_id:6095|Hs108|chr15 ( 548) 417 86.1 9.5e-17
CCDS10179.1 RORA gene_id:6095|Hs108|chr15 ( 556) 417 86.1 9.6e-17
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 409 84.7 2.8e-16
CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 409 84.7 2.9e-16
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 404 83.7 4.3e-16
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 404 83.7 4.4e-16
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 404 83.8 5.3e-16
CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 ( 614) 403 83.6 6.1e-16
CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 400 83.0 7.1e-16
CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 398 82.6 1e-15
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 392 81.5 1.7e-15
CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 392 81.5 1.9e-15
CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 392 81.5 1.9e-15
>>CCDS2642.1 RARB gene_id:5915|Hs108|chr3 (448 aa)
initn: 3017 init1: 3017 opt: 3017 Z-score: 2980.4 bits: 560.7 E(32554): 1.1e-159
Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
370 380 390 400 410 420
430 440
pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ
::::::::::::::::::::::::::::
CCDS26 SGNTAEHSPSISPSSVENSGVSQSPLVQ
430 440
>>CCDS41790.1 RARG gene_id:5916|Hs108|chr12 (443 aa)
initn: 2277 init1: 2240 opt: 2276 Z-score: 2249.4 bits: 425.4 E(32554): 5.7e-119
Smith-Waterman score: 2276; 74.4% identity (89.7% similar) in 445 aa overlap (1-445:1-442)
10 20 30 40 50 60
pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
:.:::.... .: .. . .:.:.. .:.. . .::.:: . : . . ::.::::::
CCDS41 MYDCMETFAPGPRRL--YGAAGPGAGLLRRATGGSCFAGLESFAWPQPASLQSVETQSTS
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
:::.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.::::::
CCDS41 SEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
:::.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..:
CCDS41 KNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEEL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
:. ::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS41 ITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
:::::.::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS41 GFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
:::.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.::
CCDS41 LVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
::.:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . .
CCDS41 PSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQP
360 370 380 390 400 410
430 440
pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ
. . : . :.. ...: .::
CCDS41 GPHPNASSEDEVPGG-QGKGGLKSPA
420 430 440
>>CCDS42317.1 RARA gene_id:5914|Hs108|chr17 (457 aa)
initn: 2277 init1: 2225 opt: 2276 Z-score: 2249.2 bits: 425.4 E(32554): 5.8e-119
Smith-Waterman score: 2302; 75.7% identity (88.0% similar) in 460 aa overlap (1-445:1-457)
10 20 30 40 50
pF1KB5 MFDCMDVLSVSPGQIL--DFYTASPSSCMLQEKALKAC--FSGLTQTE-WQHRHTAQSIE
:.. ..: . .:. .: :::. . .:.: ::.: : .: .: :. . .:::
CCDS42 MYESVEVGGPTPNPFLVVDFYNQN-RACLLPEKGLPAPGPYSTPLRTPLWN--GSNHSIE
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIY
:::.::::.::::::: : ::.::::::::::::::::::::::::::::::::::::.:
CCDS42 TQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 TCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTA
::::::::.:::::::::::::::::::::::::::::::::::::. : ::.::: .:
CCDS42 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 ELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF
:. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: :::
CCDS42 EVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
::.::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY
::::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.:
CCDS42 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVY
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB5 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEP
.::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: .
CCDS42 VRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDT
360 370 380 390 400 410
420 430 440
pF1KB5 LT--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ
:. :...: . :::.:::: ..: ...::
CCDS42 LSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP
420 430 440 450
>>CCDS11366.1 RARA gene_id:5914|Hs108|chr17 (462 aa)
initn: 2301 init1: 2218 opt: 2227 Z-score: 2200.8 bits: 416.5 E(32554): 2.9e-116
Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::.::::.::::::: : ::.:::::
CCDS11 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
:::::::::::::::::::::::::::::::.:::::::::.::::::::::::::::::
CCDS11 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
:::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.::::::::
CCDS11 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::.:...:: ::. ::::::::.:::::: :::::.::::: ::::::::::::::::::
CCDS11 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
:::::::::::::::::::::::::::::::::::::::::.::::::::::::.:::::
CCDS11 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::.: .:: ::::::::::.:.::::::.::::::.::::::::::::
CCDS11 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA
330 340 350 360 370 380
390 400 410 420 430
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS
:::::::::::::::::::::::::::::: . :. :...: . :::.:
CCDS11 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS
390 400 410 420 430 440
440
pF1KB5 PSSVENSGVSQSPLVQ
::: ..: ...::
CCDS11 PSSNRSSPATHSP
450 460
>>CCDS46775.1 RARB gene_id:5915|Hs108|chr3 (336 aa)
initn: 2222 init1: 2222 opt: 2222 Z-score: 2197.9 bits: 415.5 E(32554): 4.2e-116
Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 336 aa overlap (113-448:1-336)
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
::::::::::::::::::::::::::::::
CCDS46 MIYTCHRDKNCVINKVTRNRCQYCRLQKCF
10 20 30
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
280 290 300 310 320 330
pF1KB5 QSPLVQ
::::::
CCDS46 QSPLVQ
>>CCDS8850.1 RARG gene_id:5916|Hs108|chr12 (454 aa)
initn: 2230 init1: 2193 opt: 2199 Z-score: 2173.3 bits: 411.3 E(32554): 9.8e-115
Smith-Waterman score: 2199; 78.0% identity (90.6% similar) in 413 aa overlap (33-445:42-453)
10 20 30 40 50 60
pF1KB5 DCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSE
:. : :: : . .. .. :.::::::::
CCDS88 GALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVETQSTSSE
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB5 ELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKN
:.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.::::::::
CCDS88 EMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB5 CVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTE
:.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..:
CCDS88 CIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELIT
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB5 KIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGF
:. ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS88 KVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGF
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB5 TGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV
:::.::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS88 TGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV
260 270 280 290 300 310
310 320 330 340 350 360
pF1KB5 FTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPS
:.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.::::
CCDS88 FAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS
320 330 340 350 360 370
370 380 390 400 410 420
pF1KB5 KPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSG
.:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . . .
CCDS88 QPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGP
380 390 400 410 420 430
430 440
pF1KB5 NTAEHSPSISPSSVENSGVSQSPLVQ
. : . :.. ...: .::
CCDS88 HPNASSEDEVPGG-QGKGGLKSPA
440 450
>>CCDS58236.1 RARG gene_id:5916|Hs108|chr12 (382 aa)
initn: 2144 init1: 2107 opt: 2116 Z-score: 2092.5 bits: 396.2 E(32554): 3.1e-110
Smith-Waterman score: 2116; 80.4% identity (92.1% similar) in 382 aa overlap (64-445:1-381)
40 50 60 70 80 90
pF1KB5 KACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHY
.::: ::: ::::::::::::.::::::::
CCDS58 MVPSSPSPPPPPRVYKPCFVCNDKSSGYHY
10 20 30
100 110 120 130 140 150
pF1KB5 GVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRN
:::.::::::::::::::::.:::::::::.:::::::::::::::::::::::::.:::
CCDS58 GVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 DRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRL
::::::::.... .:::.. .:..: :. ::::::::::::::::::::::::::.:
CCDS58 DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE
::::::::::::::::::::::::::::::::.::::::::::::::::.::::::::::
CCDS58 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ
::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::.
CCDS58 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRM
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM
::::: :::::::::::::..: :.::::.:.:::..::::::::.::.:::::.:::::
CCDS58 DLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
280 290 300 310 320 330
400 410 420 430 440
pF1KB5 EIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ
:::: :::::.::::: : : . . . . : . :.. ...: .::
CCDS58 EIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGG-QGKGGLKSPA
340 350 360 370 380
>>CCDS58237.1 RARG gene_id:5916|Hs108|chr12 (432 aa)
initn: 1862 init1: 1839 opt: 1858 Z-score: 1837.2 bits: 349.1 E(32554): 5.2e-96
Smith-Waterman score: 1858; 79.4% identity (91.9% similar) in 345 aa overlap (101-445:88-431)
80 90 100 110 120 130
pF1KB5 PLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTR
:.:::::::::::.:::::::::.::::::
CCDS58 PGPGPACCAEPPAAPVSPDLNLLPGRNPPACNGFFRRSIQKNMVYTCHRDKNCIINKVTR
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB5 NRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQE
:::::::::::::::::::.:::::::::::.... .:::.. .:..: :. :::::
CCDS58 NRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQE
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB5 TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQ
:::::::::::::::::::::.:::::::::::::::::::::::::::::::::.::::
CCDS58 TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQ
180 190 200 210 220 230
260 270 280 290 300 310
pF1KB5 ITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLL
::::::::::::.::::::::::::::::::::::::::::::::::::::::.::.:::
CCDS58 ITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLL
240 250 260 270 280 290
320 330 340 350 360 370
pF1KB5 PLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKI
::::::::::::::::::::::.::::: :::::::::::::..: :.::::.:.:::..
CCDS58 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRM
300 310 320 330 340 350
380 390 400 410 420 430
pF1KB5 LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPS
::::::::.::.:::::.::::::::: :::::.::::: : : . . . . : .
CCDS58 LMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSED
360 370 380 390 400 410
440
pF1KB5 ISPSSVENSGVSQSPLVQ
:.. ...: .::
CCDS58 EVPGG-QGKGGLKSPA
420 430
>>CCDS45671.1 RARA gene_id:5914|Hs108|chr17 (365 aa)
initn: 1620 init1: 1545 opt: 1557 Z-score: 1541.4 bits: 294.1 E(32554): 1.6e-79
Smith-Waterman score: 1583; 78.3% identity (89.6% similar) in 309 aa overlap (147-445:57-365)
120 130 140 150 160 170
pF1KB5 CHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAE
: .:::::::::::. : ::.::: .: :
CCDS45 FFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPATVRNDRNKKKKEVPKPECSESYTLTPE
30 40 50 60 70 80
180 190 200 210 220 230
pF1KB5 LDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFA
. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: ::::
CCDS45 VGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFA
90 100 110 120 130 140
240 250 260 270 280 290
pF1KB5 KRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG
:.::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB5 PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYI
:::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.:.
CCDS45 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYV
210 220 230 240 250 260
360 370 380 390 400 410
pF1KB5 RKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPL
::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: . :
CCDS45 RKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTL
270 280 290 300 310 320
420 430 440
pF1KB5 T--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ
. :...: . :::.:::: ..: ...::
CCDS45 SGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP
330 340 350 360
>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa)
initn: 722 init1: 388 opt: 719 Z-score: 713.2 bits: 141.2 E(32554): 2.1e-33
Smith-Waterman score: 719; 35.0% identity (64.8% similar) in 349 aa overlap (65-408:119-456)
40 50 60 70 80 90
pF1KB5 ACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYG
::. :: . . : .: :.::: :::
CCDS35 TGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 VSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND
: .::::::::.:...:.. :::. .:.:.:.: :::::::: :::. .::..:.:...
CCDS35 VYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB5 RNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFP---SLCQLGKYTTNSSADHR
:.. : .. .. : : : :. : .:.: .:. . : . . . . :: .
CCDS35 RQRGKDRNENEVESTSS----ANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB5 VRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRY
: .. . : : .. .::.:::.: :. : . ::. ::.:. ..:: . :
CCDS35 VT-------NICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
270 280 290 300 310
280 290 300 310 320
pF1KB5 TPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLIC
.: . .. :: ..:.. :.:: : . : :.: ..... ..:: :: : : :: :.
CCDS35 IAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB5 GDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVI
: . : .:..:. :.: . .:. : ... : .: : :.:... ::::. : :...
CCDS35 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF
380 390 400 410 420 430
390 400 410 420 430 440
pF1KB5 TLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ
.:. . ...::::
CCDS35 FFKLIGDTPIDTFLMEMLEAPHQMT
440 450 460
448 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:53:48 2016 done: Sun Nov 6 17:53:48 2016
Total Scan time: 3.230 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]