FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5803, 450 aa
  1>>>pF1KB5803 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8328+/-0.000907; mu= 10.7606+/- 0.054
 mean_var=104.4987+/-21.972, 0's: 0 Z-trim(108.4): 27  B-trim: 333 in 1/50
 Lambda= 0.125464
 statistics sampled from 10141 (10157) to 10141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS5755.2 ZNF277 gene_id:11179|Hs108|chr7         ( 450) 3080 568.1 6.2e-162


>>CCDS5755.2 ZNF277 gene_id:11179|Hs108|chr7              (450 aa)
 initn: 3080 init1: 3080 opt: 3080  Z-score: 3020.7  bits: 568.1 E(32554): 6.2e-162
Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB5 MAASKTQGAVARMQEDRDGSCSTVGGVGYGDSKDCILEPLSLPESPGGTTTLEGSPSVPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MAASKTQGAVARMQEDRDGSCSTVGGVGYGDSKDCILEPLSLPESPGGTTTLEGSPSVPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 IFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 INSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERNDTNFHGVCMFCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 INSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERNDTNFHGVCMFCNE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 EFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 SAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 GCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQ
              370       380       390       400       410       420

              430       440       450
pF1KB5 EQNENVPIISEDTSKLYALKQSSILNQLLL
       ::::::::::::::::::::::::::::::
CCDS57 EQNENVPIISEDTSKLYALKQSSILNQLLL
              430       440       450




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:06:13 2016 done: Mon Nov  7 18:06:14 2016
 Total Scan time:  2.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]