FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5753, 756 aa
  1>>>pF1KB5753 756 - 756 aa - 756 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1070+/-0.00116; mu= 3.2554+/- 0.070
 mean_var=203.7262+/-40.254, 0's: 0 Z-trim(108.2): 22  B-trim: 0 in 0/53
 Lambda= 0.089857
 statistics sampled from 10066 (10074) to 10066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.309), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(32554)
CCDS44174.1 DNTTIP2 gene_id:30836|Hs108|chr1       ( 756) 4816 637.7  2e-182


>>CCDS44174.1 DNTTIP2 gene_id:30836|Hs108|chr1            (756 aa)
 initn: 4816 init1: 4816 opt: 4816  Z-score: 3388.7  bits: 637.7 E(32554): 2e-182
Smith-Waterman score: 4816; 99.9% identity (100.0% similar) in 756 aa overlap (1-756:1-756)

               10        20        30        40        50        60
pF1KB5 MVVTRSARAKASIQAASAESSGQKSFAANGIQAHPESSTGSDARTTAESQTTGKQSLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVVTRSARAKASIQAASAESSGQKSFAANGIQAHPESSTGSDARTTAESQTTGKQSLIPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TPKARKRKSRTTGSLPKGTEPSTDGETSEAESNYSVSEHHDTILRVTRRRQILIACSPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TPKARKRKSRTTGSLPKGTEPSTDGETSEAESNYSVSEHHDTILRVTRRRQILIACSPVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SVRKKPKVTPTKESYTEEIVSEAESHVSGISRIVLPTEKTTGARRSKAKSLTDPSQESHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVRKKPKVTPTKESYTEEIVSEAESHVSGISRIVLPTEKTTGARRSKAKSLTDPSQESHT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EAISDAETSSSDISFSGIATRRTRSMQRKLKAQTEKKDSKIVPGNEKQIVGTPVNSEDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EAISDAETSSSDISFSGIATRRTRSMQRKLKAQTEKKDSKIVPGNEKQIVGTPVNSEDSD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TRQTSHLQARSLSEINKPNFYNNDFDDDFSHRSSENILTVHEQANVESLKETKQNCKDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TRQTSHLQARSLSEINKPNFYNNDFDDDFSHRSSENILTVHEQANVESLKETKQNCKDLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EDANGITDDGKEINEKSSQLKNLSELQDTSLQQLVSQRHSTPQNKNAVSVHSNLNSEAVM
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EDANGITDEGKEINEKSSQLKNLSELQDTSLQQLVSQRHSTPQNKNAVSVHSNLNSEAVM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KSLTQTFATVEVGRWNNNKKSPIKASDLTKFGDCGGSDDEEESTVISVSEDMNSEGNVDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KSLTQTFATVEVGRWNNNKKSPIKASDLTKFGDCGGSDDEEESTVISVSEDMNSEGNVDF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ECDTKLYTSAPNTSQGKDNSVLLVLSSDESQQSENSENEEDTLCFVENSGQRESLSGDTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ECDTKLYTSAPNTSQGKDNSVLLVLSSDESQQSENSENEEDTLCFVENSGQRESLSGDTG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SLSCDNALFVIDTTPGMSADKNFYLEEEDKASEVAIEEEKEEEEDEKSEEDSSDHDENED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLSCDNALFVIDTTPGMSADKNFYLEEEDKASEVAIEEEKEEEEDEKSEEDSSDHDENED
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 EFSDEEDFLNSTKAKLLKLTSSSIDPGLSIKQLGGLYINFNADKLQSNKRTLTQIKEKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EFSDEEDFLNSTKAKLLKLTSSSIDPGLSIKQLGGLYINFNADKLQSNKRTLTQIKEKKK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 NELLQKAVITPDFEKNHCVPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NELLQKAVITPDFEKNHCVPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKND
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 LKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLA
              670       680       690       700       710       720

              730       740       750      
pF1KB5 DSEFRRYNRRKYSEIMAEKAANAAGKKFRKKKKFRN
       ::::::::::::::::::::::::::::::::::::
CCDS44 DSEFRRYNRRKYSEIMAEKAANAAGKKFRKKKKFRN
              730       740       750      




756 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:48:31 2016 done: Sun Nov  6 10:48:32 2016
 Total Scan time:  4.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]