FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5742, 741 aa
  1>>>pF1KB5742 741 - 741 aa - 741 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3650+/-0.00138; mu= 4.7678+/- 0.081
 mean_var=229.4485+/-49.919, 0's: 0 Z-trim(106.3): 186  B-trim: 206 in 1/48
 Lambda= 0.084670
 statistics sampled from 8702 (8895) to 8702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.273), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS1347.1 RNASEL gene_id:6041|Hs108|chr1          ( 741) 4947 618.7 9.9e-177


>>CCDS1347.1 RNASEL gene_id:6041|Hs108|chr1               (741 aa)
 initn: 4947 init1: 4947 opt: 4947  Z-score: 3286.3  bits: 618.7 E(32554): 9.9e-177
Smith-Waterman score: 4947; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741)

               10        20        30        40        50        60
pF1KB5 MESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 CGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 YGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 YTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDLGRLVLYVVKKGSISFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDLGRLVLYVVKKGSISFE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 DLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 NESDIKTRKSESEILRLLQPGPSEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NESDIKTRKSESEILRLLQPGPSEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 DLLKFIRNLGEHIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLLKFIRNLGEHIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQTH
              670       680       690       700       710       720

              730       740 
pF1KB5 SPNKPQCDGAGGASGLASPGC
       :::::::::::::::::::::
CCDS13 SPNKPQCDGAGGASGLASPGC
              730       740 




741 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:53:33 2016 done: Mon Nov  7 16:53:33 2016
 Total Scan time:  3.240 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]