Result of FASTA (ccds) for
pFN21AB5712
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5712, 720 aa
1>>>pF1KB5712 720 - 720 aa - 720 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1924+/-0.000934; mu= -0.2427+/- 0.056
mean_var=301.4069+/-60.958, 0's: 0 Z-trim(115.5): 24 B-trim: 0 in 0/53
Lambda= 0.073875
statistics sampled from 16020 (16041) to 16020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.493), width: 16
Scan time: 5.030
The best scores are: opt bits E(32554)
CCDS72732.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 720) 4938 540.0 4.7e-153
CCDS276.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 713) 4868 532.5 8.2e-151
CCDS76124.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 455) 3143 348.5 1.3e-95
>>CCDS72732.1 CNKSR1 gene_id:10256|Hs108|chr1 (720 aa)
initn: 4938 init1: 4938 opt: 4938 Z-score: 2861.3 bits: 540.0 E(32554): 4.7e-153
Smith-Waterman score: 4938; 100.0% identity (100.0% similar) in 720 aa overlap (1-720:1-720)
10 20 30 40 50 60
pF1KB5 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL
670 680 690 700 710 720
>>CCDS276.1 CNKSR1 gene_id:10256|Hs108|chr1 (713 aa)
initn: 3220 init1: 3220 opt: 4868 Z-score: 2821.1 bits: 532.5 E(32554): 8.2e-151
Smith-Waterman score: 4868; 99.0% identity (99.0% similar) in 720 aa overlap (1-720:1-713)
10 20 30 40 50 60
pF1KB5 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS
::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS27 DEVVQINEQVV-------VGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB5 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB5 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB5 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ
600 610 620 630 640 650
670 680 690 700 710 720
pF1KB5 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL
660 670 680 690 700 710
>>CCDS76124.1 CNKSR1 gene_id:10256|Hs108|chr1 (455 aa)
initn: 3143 init1: 3143 opt: 3143 Z-score: 1830.1 bits: 348.5 E(32554): 1.3e-95
Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 455 aa overlap (266-720:1-455)
240 250 260 270 280 290
pF1KB5 QIQPGDEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPP
::::::::::::::::::::::::::::::
CCDS76 MVRELLREPAGLSLVLKKIPIPETPPQTPP
10 20 30
300 310 320 330 340 350
pF1KB5 QVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPE
40 50 60 70 80 90
360 370 380 390 400 410
pF1KB5 PPAILPAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PPAILPAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKA
100 110 120 130 140 150
420 430 440 450 460 470
pF1KB5 PGGFMGPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PGGFMGPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KB5 VYKPFIFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VYKPFIFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHS
220 230 240 250 260 270
540 550 560 570 580 590
pF1KB5 ASPSPAQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ASPSPAQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQP
280 290 300 310 320 330
600 610 620 630 640 650
pF1KB5 QPLTQEQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QPLTQEQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFR
340 350 360 370 380 390
660 670 680 690 700 710
pF1KB5 QWKEQNRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QWKEQNRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSL
400 410 420 430 440 450
720
pF1KB5 RPPDL
:::::
CCDS76 RPPDL
720 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:05:07 2016 done: Sun Nov 6 23:05:07 2016
Total Scan time: 5.030 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]