FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4605, 472 aa
  1>>>pF1KB4605 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1975+/-0.000895; mu= 18.4447+/- 0.054
 mean_var=63.7694+/-12.608, 0's: 0 Z-trim(105.1): 24  B-trim: 0 in 0/51
 Lambda= 0.160608
 statistics sampled from 8222 (8236) to 8222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS14210.1 EIF2S3 gene_id:1968|Hs108|chrX         ( 472) 3080 722.6 2.2e-208
CCDS33849.1 EEFSEC gene_id:60678|Hs108|chr3        ( 596)  278 73.4 7.5e-13


>>CCDS14210.1 EIF2S3 gene_id:1968|Hs108|chrX              (472 aa)
 initn: 3080 init1: 3080 opt: 3080  Z-score: 3854.5  bits: 722.6 E(32554): 2.2e-208
Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KB4 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KB4 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
              430       440       450       460       470  

>>CCDS33849.1 EEFSEC gene_id:60678|Hs108|chr3             (596 aa)
 initn: 273 init1: 109 opt: 278  Z-score: 344.2  bits: 73.4 E(32554): 7.5e-13
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)

        10        20        30        40        50        60       
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
                                     :....:.:..::.  ::.....:.: .  :
CCDS33                            MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
                                          10        20        30   

         70           80        90       100       110       120   
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
       . : ..    ::.::. ::..          : : :   ::   : : :: .   .    
CCDS33 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
            40        50                60            70        80 

           130       140       150       160       170       180   
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
        . . .:..::::::  :. :...:: ..:  .:.:  ...  : :..: :.  .:   :
CCDS33 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
              90       100       110       120        130       140

           190       200       210           220                   
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
        ...: :::::. :.. .   ...   .: :. .    ::::::..:.            
CCDS33 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
               150       160       170       180       190         

     230       240       250       260       270       280         
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
        .:  . : ....: .: ::  : : :.   : :     :     .: :  :.::.: ..
CCDS33 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
     200       210        220              230       240       250 

     290       300       310       320       330       340         
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
       .:. .:. :..             . .:. :.   :  .  :  :  .:.  :..:: : 
CCDS33 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
              260                   270       280       290        

      350       360       370       380       390       400        
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
                                                                   
CCDS33 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
      300       310       320       330       340       350        




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:28:44 2016 done: Mon Nov  7 14:28:45 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]