FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4189, 755 aa
  1>>>pF1KB4189 755 - 755 aa - 755 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2026+/-0.00125; mu= -0.7831+/- 0.075
 mean_var=372.9315+/-74.425, 0's: 0 Z-trim(111.8): 66  B-trim: 0 in 0/53
 Lambda= 0.066414
 statistics sampled from 12644 (12685) to 12644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.39), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS14657.1 HTATSF1 gene_id:27336|Hs108|chrX       ( 755) 5068 500.5  4e-141


>>CCDS14657.1 HTATSF1 gene_id:27336|Hs108|chrX            (755 aa)
 initn: 5068 init1: 5068 opt: 5068  Z-score: 2647.1  bits: 500.5 E(32554): 4e-141
Smith-Waterman score: 5068; 100.0% identity (100.0% similar) in 755 aa overlap (1-755:1-755)

               10        20        30        40        50        60
pF1KB4 MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 PKITEDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PKITEDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 EREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 AFEEPIDEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AFEEPIDEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 SQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 EDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 EFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAAD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 KKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDD
              670       680       690       700       710       720

              730       740       750     
pF1KB4 SDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI
       :::::::::::::::::::::::::::::::::::
CCDS14 SDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI
              730       740       750     




755 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:56:04 2016 done: Tue Nov  8 04:56:04 2016
 Total Scan time:  2.690 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]