Result of FASTA (omim) for
pFN21AB3073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3073, 132 aa
1>>>pF1KB3073 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6508+/-0.000415; mu= 14.4819+/- 0.026
mean_var=61.8773+/-12.114, 0's: 0 Z-trim(110.6): 27 B-trim: 0 in 0/50
Lambda= 0.163045
statistics sampled from 18962 (18989) to 18962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.223), width: 16
Scan time: 4.370
The best scores are: opt bits E(85289)
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 860 210.6 5.8e-55
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 759 187.0 9.8e-48
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 696 172.0 2.3e-43
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 599 149.2 1.8e-36
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 549 137.5 5.9e-33
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 533 133.6 6.6e-32
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 512 128.8 2.6e-30
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 505 127.1 8e-30
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 482 121.7 3.6e-28
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 397 101.7 3.6e-22
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 335 87.2 9e-18
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 335 87.2 9e-18
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 335 87.2 9e-18
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 326 85.0 3.9e-17
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 324 84.7 7.1e-17
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 307 80.6 8.5e-16
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 301 79.1 2.3e-15
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 285 75.4 3e-14
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 263 70.3 1.2e-12
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 260 69.6 2e-12
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 238 64.3 6.5e-11
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 195 54.2 6.9e-08
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 161 46.2 1.8e-05
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 151 43.7 6.7e-05
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 125 37.7 0.0063
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 125 37.8 0.0081
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 125 37.8 0.0081
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 860 init1: 860 opt: 860 Z-score: 1107.7 bits: 210.6 E(85289): 5.8e-55
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
::::::::::::
NP_001 GDVVAVRHYEKA
130
>>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa)
initn: 759 init1: 759 opt: 759 Z-score: 978.0 bits: 187.0 E(85289): 9.8e-48
Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa)
initn: 696 init1: 696 opt: 696 Z-score: 899.4 bits: 172.0 E(85289): 2.3e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (25-132:21-128)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::
NP_001 MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
60 70 80 90 100 110
130
pF1KB3 GDVVAVRHYEKA
::::::::::::
NP_001 GDVVAVRHYEKA
120
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 599 init1: 599 opt: 599 Z-score: 775.9 bits: 149.2 E(85289): 1.8e-36
Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...:::
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
: .: .: :::
NP_004 GTAVCTRTYEKEA
130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 549 init1: 549 opt: 549 Z-score: 712.6 bits: 137.5 E(85289): 5.9e-33
Smith-Waterman score: 549; 68.1% identity (93.1% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
XP_011 QLRNVK
>>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa)
initn: 533 init1: 533 opt: 533 Z-score: 693.8 bits: 133.6 E(85289): 6.6e-32
Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE
70 80 90
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 512 init1: 512 opt: 512 Z-score: 665.3 bits: 128.8 E(85289): 2.6e-30
Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: .
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
:: .: :::
NP_002 KGVVCTRIYEKV
130
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 515 init1: 497 opt: 505 Z-score: 656.4 bits: 127.1 E(85289): 8e-30
Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
: .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. :::::
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. ..
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
:...: ::.:
NP_001 KGVTSTRVYERA
130
>>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa)
initn: 585 init1: 482 opt: 482 Z-score: 626.7 bits: 121.7 E(85289): 3.6e-28
Smith-Waterman score: 567; 62.0% identity (83.8% similar) in 142 aa overlap (1-131:1-142)
10 20 30 40
pF1KB3 MVEAFCATWKLTNSQNFDEYMKAL-----------GVGFATRQVGNVTKPTVIISQEGDK
::.:: .::::..:.:::.:::.: :::::::::...::::.:: ..::
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREI
....: ::::::::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::.
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
70 80 90 100 110 120
110 120 130
pF1KB3 KDGKMVMTLTFGDVVAVRHYEKA
:::...::: : .: .: :::
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
130 140
>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa)
initn: 397 init1: 397 opt: 397 Z-score: 519.0 bits: 101.7 E(85289): 3.6e-22
Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (2-131:4-133)
10 20 30 40 50
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
:. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::.
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
:.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:.
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KB3 TFGDVVAVRHYEKA
....:. .: :::
NP_001 VMNNVTCTRIYEKVE
130
132 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:42:55 2016 done: Mon Nov 7 01:42:56 2016
Total Scan time: 4.370 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]