Result of FASTA (ccds) for
pFN21AB3014
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3014, 1010 aa
1>>>pF1KB3014 1010 - 1010 aa - 1010 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5763+/-0.000995; mu= 19.6293+/- 0.060
mean_var=65.9747+/-13.375, 0's: 0 Z-trim(103.2): 26 B-trim: 0 in 0/51
Lambda= 0.157901
statistics sampled from 7267 (7278) to 7267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.224), width: 16
Scan time: 3.390
The best scores are: opt bits E(32554)
CCDS13627.1 GART gene_id:2618|Hs108|chr21 (1010) 6593 1511.6 0
CCDS13628.1 GART gene_id:2618|Hs108|chr21 ( 433) 2839 656.3 3.9e-188
>>CCDS13627.1 GART gene_id:2618|Hs108|chr21 (1010 aa)
initn: 6593 init1: 6593 opt: 6593 Z-score: 8107.0 bits: 1511.6 E(32554): 0
Smith-Waterman score: 6593; 99.9% identity (100.0% similar) in 1010 aa overlap (1-1010:1-1010)
10 20 30 40 50 60
pF1KB3 MAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 FCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCRFGDPECQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCRFGDPECQV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 ILPLLKSDLYEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ILPLLKSDLYEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IGFRAIAFLQQPRSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCKVDLGGFAGLFDLK
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGFRAIAFLQQPRSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCKVDLGGFAGLFDLK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 AAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 HLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 IYSHSLLPVLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IYSHSLLPVLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 HLSEEEMARTFNCGVGAVLVVSKEQTEQILRDIQQHKEEAWVIGSVVARAEGSPRVKVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLSEEEMARTFNCGVGAVLVVSKEQTEQILRDIQQHKEEAWVIGSVVARAEGSPRVKVKN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 LIESMQINGSVLKNGSLTNHFSFEKKKARVAVLISGTGSNLQALIDSTREPNSSAQIDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIESMQINGSVLKNGSLTNHFSFEKKKARVAVLISGTGSNLQALIDSTREPNSSAQIDIV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 ISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 GPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEA
910 920 930 940 950 960
970 980 990 1000 1010
pF1KB3 VPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWVKEE
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWVKEE
970 980 990 1000 1010
>>CCDS13628.1 GART gene_id:2618|Hs108|chr21 (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 3491.1 bits: 656.3 E(32554): 3.9e-188
Smith-Waterman score: 2839; 99.8% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KB3 MAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 FCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCRFGDPECQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCRFGDPECQV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 ILPLLKSDLYEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ILPLLKSDLYEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IGFRAIAFLQQPRSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCKVDLGGFAGLFDLK
.::::::::::::
CCDS13 VGFRAIAFLQQPR
430
1010 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:00:53 2016 done: Mon Nov 7 04:00:54 2016
Total Scan time: 3.390 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]