FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0985, 310 aa
  1>>>pF1KB0985 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5289+/-0.000824; mu= 5.9459+/- 0.050
 mean_var=283.7375+/-59.099, 0's: 0 Z-trim(117.7): 159  B-trim: 1057 in 1/51
 Lambda= 0.076141
 statistics sampled from 18328 (18498) to 18328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.568), width:  16
 Scan time:  3.330

The best scores are:                                      opt bits E(32554)
CCDS59221.1 2 gene_id:390010|Hs108|chr10           ( 310) 2123 245.4 4.3e-65


>>CCDS59221.1 2 gene_id:390010|Hs108|chr10                (310 aa)
 initn: 2123 init1: 2123 opt: 2123  Z-score: 1282.2  bits: 245.4 E(32554): 4.3e-65
Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPS
              250       260       270       280       290       300

              310
pF1KB0 YLTPFYAPRL
       ::::::::::
CCDS59 YLTPFYAPRL
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:36:39 2016 done: Sun Nov  6 04:36:40 2016
 Total Scan time:  3.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]