FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0944, 393 aa
  1>>>pF1KB0944 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8341+/-0.000857; mu= 3.4972+/- 0.052
 mean_var=253.2560+/-49.697, 0's: 0 Z-trim(117.0): 24  B-trim: 0 in 0/50
 Lambda= 0.080592
 statistics sampled from 17669 (17688) to 17669 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.543), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15       ( 397) 2813 339.5 3.3e-93
CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15        ( 268)  712 95.0 8.5e-20


>>CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15            (397 aa)
 initn: 1596 init1: 1596 opt: 2813  Z-score: 1787.0  bits: 339.5 E(32554): 3.3e-93
Smith-Waterman score: 2813; 99.0% identity (99.0% similar) in 397 aa overlap (1-393:1-397)

               10        20        30        40        50        60
pF1KB0 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ
              130       140       150       160       170       180

              190       200           210       220       230      
pF1KB0 GQGQGQGQGQGQGQGQGQGQG----RRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV
       :::::::::::::::::::::    :::::::::::::::::::::::::::::::::::
CCDS42 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB0 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KB0 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA
              310       320       330       340       350       360

        360       370       380       390   
pF1KB0 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY
       :::::::::::::::::::::::::::::::::::::
CCDS42 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY
              370       380       390       

>>CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15             (268 aa)
 initn: 842 init1: 619 opt: 712  Z-score: 468.9  bits: 95.0 E(32554): 8.5e-20
Smith-Waterman score: 802; 52.5% identity (63.2% similar) in 299 aa overlap (1-282:1-268)

                 10        20        30              40        50  
pF1KB0 MAQSP--PPQSLLGHDHWIFAQGWGWAGHWDST------SPASSSDSSGSCPCDGARGLP
       ::: :  :: :    . :... .:: . .   .      : .:: :: :: : :.   . 
CCDS10 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA
                10            20        30        40        50     

             60        70        80         90       100       110 
pF1KB0 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS
       .:  :. . :  .: ..  : ::..  : :::::::::::::::::::::::::::::::
CCDS10 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS
             60        70        80        90       100       110  

             120       130       140       150       160       170 
pF1KB0 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA
       .::::::::::::::::::::::::::::::::::: : ::::::::: :::::::  ::
CCDS10 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA
            120       130       140       150       160       170  

             180       190       200       210       220       230 
pF1KB0 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPER
       . ::.....:::::.: :                ::::: : :::::: :::::.:::: 
CCDS10 QMQTRTQAEGQGQGRGLG----------------LVSAVRAGASWGSPPACPGARAAPE-
            180       190                       200       210      

             240         250           260         270       280   
pF1KB0 LGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQSSPEP
               :: :  .   ::. :    :::         : :  : : .   :    :. 
CCDS10 ------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPEEPK 
               220       230       240       250       260         

           290       300       310       320       330       340   
pF1KB0 RNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSA




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:48:11 2016 done: Sat Nov  5 22:48:12 2016
 Total Scan time:  3.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]