FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0444, 905 aa
  1>>>pF1KB0444 905 - 905 aa - 905 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4570+/-0.00122; mu= 11.9366+/- 0.073
 mean_var=140.0896+/-27.549, 0's: 0 Z-trim(105.2): 39  B-trim: 0 in 0/51
 Lambda= 0.108361
 statistics sampled from 8281 (8300) to 8281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.255), width:  16
 Scan time:  3.950

The best scores are:                                      opt bits E(32554)
CCDS6948.1 TTF1 gene_id:7270|Hs108|chr9            ( 905) 5900 935.0       0
CCDS75925.1 TTF1 gene_id:7270|Hs108|chr9           ( 390) 2572 414.5 1.9e-115


>>CCDS6948.1 TTF1 gene_id:7270|Hs108|chr9                 (905 aa)
 initn: 5900 init1: 5900 opt: 5900  Z-score: 4992.5  bits: 935.0 E(32554):    0
Smith-Waterman score: 5900; 100.0% identity (100.0% similar) in 905 aa overlap (1-905:1-905)

               10        20        30        40        50        60
pF1KB0 MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 KDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 QAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMPESLESAYPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMPESLESAYPEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 SQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 SVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSAD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 SGDADDSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SGDADDSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 VKENKQLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VKENKQLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 KLIYYRAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KLIYYRAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB0 SWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDT
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB0 NEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB0 KMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQ
              850       860       870       880       890       900

            
pF1KB0 GRWII
       :::::
CCDS69 GRWII
            

>>CCDS75925.1 TTF1 gene_id:7270|Hs108|chr9                (390 aa)
 initn: 2572 init1: 2572 opt: 2572  Z-score: 2186.0  bits: 414.5 E(32554): 1.9e-115
Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 390 aa overlap (516-905:1-390)

         490       500       510       520       530       540     
pF1KB0 DSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFSVKENK
                                     ::::::::::::::::::::::::::::::
CCDS75                               MYRDDLERFKEFKAQGVAIKFGKFSVKENK
                                             10        20        30

         550       560       570       580       590       600     
pF1KB0 QLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYY
               40        50        60        70        80        90

         610       620       630       640       650       660     
pF1KB0 RAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRN
              100       110       120       130       140       150

         670       680       690       700       710       720     
pF1KB0 RGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGISWVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGISWVEV
              160       170       180       190       200       210

         730       740       750       760       770       780     
pF1KB0 EAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDTNEIDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDTNEIDW
              220       230       240       250       260       270

         790       800       810       820       830       840     
pF1KB0 EDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEK
              280       290       300       310       320       330

         850       860       870       880       890       900     
pF1KB0 KGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII
              340       350       360       370       380       390




905 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:28:12 2016 done: Sun Nov  6 20:28:13 2016
 Total Scan time:  3.950 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]