FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1903, 1132 aa
  1>>>pF1KA1903 1132 - 1132 aa - 1132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3535+/-0.00122; mu= 12.6133+/- 0.074
 mean_var=112.2200+/-22.281, 0's: 0 Z-trim(104.5): 28  B-trim: 114 in 2/48
 Lambda= 0.121071
 statistics sampled from 7928 (7940) to 7928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.244), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(32554)
CCDS9684.1 MIS18BP1 gene_id:55320|Hs108|chr14      (1132) 7405 1305.3       0


>>CCDS9684.1 MIS18BP1 gene_id:55320|Hs108|chr14           (1132 aa)
 initn: 7405 init1: 7405 opt: 7405  Z-score: 6990.5  bits: 1305.3 E(32554):    0
Smith-Waterman score: 7405; 100.0% identity (100.0% similar) in 1132 aa overlap (1-1132:1-1132)

               10        20        30        40        50        60
pF1KA1 MIATPLKHSRIYLPPEASSQRRNLPMDAIFFDSIPSGTLTPVKDLVKYQNSSLKLNDHKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MIATPLKHSRIYLPPEASSQRRNLPMDAIFFDSIPSGTLTPVKDLVKYQNSSLKLNDHKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 NQFLKMTTFNNKNIFQSTMLTEATTSNSSLDISAIKPNKDGLKNKANYESPGKIFLRMKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NQFLKMTTFNNKNIFQSTMLTEATTSNSSLDISAIKPNKDGLKNKANYESPGKIFLRMKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 KVLRDKQEQPSRNSSLLEPQKSGNNETFTPNRVEKKKLQHTYLCEEKENNKSFQSDDSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KVLRDKQEQPSRNSSLLEPQKSGNNETFTPNRVEKKKLQHTYLCEEKENNKSFQSDDSSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RASVQGVPLESSNNDIFLPVKQKIQCQQEKKAPLHNLTYELPTLNQEQENFLAVEARNKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RASVQGVPLESSNNDIFLPVKQKIQCQQEKKAPLHNLTYELPTLNQEQENFLAVEARNKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LTRAQLAKQIFHSKESIVATTKSKKDTFVLESVDSADEQFQNTNAETLSTNCIPIKNGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LTRAQLAKQIFHSKESIVATTKSKKDTFVLESVDSADEQFQNTNAETLSTNCIPIKNGSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LMVSDSERTTEGTSQQKVKEGNGKTVPGETGLPGSMKDTCKIVLATPRLHITIPRRSKRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LMVSDSERTTEGTSQQKVKEGNGKTVPGETGLPGSMKDTCKIVLATPRLHITIPRRSKRN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 ISKLSPPRIFQTVTNGLKKNQVVQLQEWMIKSINNNTAICVEGKLIDVTNIYWHSNVIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ISKLSPPRIFQTVTNGLKKNQVVQLQEWMIKSINNNTAICVEGKLIDVTNIYWHSNVIIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 RIEHNKLRTISGNVYILKGMIDQISMKEAGYPNYLIRKFMFGFPENWKEHIDNFLEQLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RIEHNKLRTISGNVYILKGMIDQISMKEAGYPNYLIRKFMFGFPENWKEHIDNFLEQLRA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 GEKNREKTKQKQKTGRSVRDIRKSMKNDARENQTDTAQRATTTYDFDCDNLELKSNKHSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GEKNREKTKQKQKTGRSVRDIRKSMKNDARENQTDTAQRATTTYDFDCDNLELKSNKHSE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SPGATELNMCHSNCQNKPTLRFPDDQVNNTIQNGGGDDLSNQELIGKKEYKMSSKKLKIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SPGATELNMCHSNCQNKPTLRFPDDQVNNTIQNGGGDDLSNQELIGKKEYKMSSKKLKIG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ERTNERIIKSQKQETTEELDVSIDILTSREQFFSDEERKYMAINQKKAYILVTPLKSRKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ERTNERIIKSQKQETTEELDVSIDILTSREQFFSDEERKYMAINQKKAYILVTPLKSRKV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 IEQRCMRYNLSAGTIKAVTDFVIPECQKKSPISKSMGTLENTFEGHKSKNKEDCDERDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IEQRCMRYNLSAGTIKAVTDFVIPECQKKSPISKSMGTLENTFEGHKSKNKEDCDERDLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 TVNRKIKISNLEKEQMLTSDFKKNTRLLPKLKKIENQVAMSFYKHQSSPDLSSEESETEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TVNRKIKISNLEKEQMLTSDFKKNTRLLPKLKKIENQVAMSFYKHQSSPDLSSEESETEK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 EIKRKAEVKKTKAGNTKEAVVHLRKSTRNTSNIPVILEPETEESENEFYIKQKKARPSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EIKRKAEVKKTKAGNTKEAVVHLRKSTRNTSNIPVILEPETEESENEFYIKQKKARPSVK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 ETLQKSGVRKEFPITEAVGSDKTNRHPLECLPGLIQDKEWNEKELQKLHCAFASLPKHKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ETLQKSGVRKEFPITEAVGSDKTNRHPLECLPGLIQDKEWNEKELQKLHCAFASLPKHKP
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 GFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKHVTKKKPANSKGQNGKRGDADQKQTIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKHVTKKKPANSKGQNGKRGDADQKQTIK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 ITAKVGTLKRKQQMREFLEQLPKDDHDDFFSTTPLQHQRILLPSFQDSEDDDDILPNMDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ITAKVGTLKRKQQMREFLEQLPKDDHDDFFSTTPLQHQRILLPSFQDSEDDDDILPNMDK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 NPTTPSSVIFPLVKTPQCQHVSPGMLGSINRNDCDKYVFRMQKYHKSNGGIVWGNIKKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NPTTPSSVIFPLVKTPQCQHVSPGMLGSINRNDCDKYVFRMQKYHKSNGGIVWGNIKKKL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130  
pF1KA1 VETDFSTPTPRRKTPFNTDLGENSGIGKLFTNAVESLDEEEKDYYFSNSDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VETDFSTPTPRRKTPFNTDLGENSGIGKLFTNAVESLDEEEKDYYFSNSDSA
             1090      1100      1110      1120      1130  




1132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:27:25 2016 done: Sun Nov  6 20:27:26 2016
 Total Scan time:  4.160 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]