Result of FASTA (ccds) for
pFN21AA1844
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1844, 647 aa
1>>>pF1KA1844 647 - 647 aa - 647 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.1937+/-0.00109; mu= -17.4321+/- 0.065
mean_var=359.2244+/-74.503, 0's: 0 Z-trim(113.6): 32 B-trim: 0 in 0/51
Lambda= 0.067669
statistics sampled from 14226 (14245) to 14226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.438), width: 16
Scan time: 4.420
The best scores are: opt bits E(32554)
CCDS7159.1 WAC gene_id:51322|Hs108|chr10 ( 647) 4275 431.4 1.8e-120
CCDS7161.1 WAC gene_id:51322|Hs108|chr10 ( 602) 3955 400.2 4.4e-111
CCDS7160.1 WAC gene_id:51322|Hs108|chr10 ( 544) 2189 227.7 3.2e-59
>>CCDS7159.1 WAC gene_id:51322|Hs108|chr10 (647 aa)
initn: 4275 init1: 4275 opt: 4275 Z-score: 2276.1 bits: 431.4 E(32554): 1.8e-120
Smith-Waterman score: 4275; 100.0% identity (100.0% similar) in 647 aa overlap (1-647:1-647)
10 20 30 40 50 60
pF1KA1 MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 FPKDRDYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FPKDRDYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 QKTERKESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QKTERKESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 NLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 STPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 STPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 TVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSE
550 560 570 580 590 600
610 620 630 640
pF1KA1 ICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV
610 620 630 640
>>CCDS7161.1 WAC gene_id:51322|Hs108|chr10 (602 aa)
initn: 3955 init1: 3955 opt: 3955 Z-score: 2107.8 bits: 400.2 E(32554): 4.4e-111
Smith-Waterman score: 3955; 100.0% identity (100.0% similar) in 602 aa overlap (46-647:1-602)
20 30 40 50 60 70
pF1KA1 HDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLRRSDSPENKYSDSTGH
::::::::::::::::::::::::::::::
CCDS71 MRDAGDPSPPNKMLRRSDSPENKYSDSTGH
10 20 30
80 90 100 110 120 130
pF1KA1 SKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDW
40 50 60 70 80 90
140 150 160 170 180 190
pF1KA1 SEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQAT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KA1 ATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVH
160 170 180 190 200 210
260 270 280 290 300 310
pF1KA1 PTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKESTSGDKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKESTSGDKPV
220 230 240 250 260 270
320 330 340 350 360 370
pF1KA1 SHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQ
280 290 300 310 320 330
380 390 400 410 420 430
pF1KA1 LNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQLSTQAQPSNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQLSTQAQPSNQ
340 350 360 370 380 390
440 450 460 470 480 490
pF1KA1 SPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSAT
400 410 420 430 440 450
500 510 520 530 540 550
pF1KA1 QQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNATVVPQNSSARSTCSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNATVVPQNSSARSTCSL
460 470 480 490 500 510
560 570 580 590 600 610
pF1KA1 TPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSEICTELKNLRSLVRVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSEICTELKNLRSLVRVC
520 530 540 550 560 570
620 630 640
pF1KA1 EIQATLREQRILFLRQQIKELEKLKNQNSFMV
::::::::::::::::::::::::::::::::
CCDS71 EIQATLREQRILFLRQQIKELEKLKNQNSFMV
580 590 600
>>CCDS7160.1 WAC gene_id:51322|Hs108|chr10 (544 aa)
initn: 2182 init1: 2182 opt: 2189 Z-score: 1176.7 bits: 227.7 E(32554): 3.2e-59
Smith-Waterman score: 3374; 83.9% identity (84.1% similar) in 647 aa overlap (1-647:1-544)
10 20 30 40 50 60
pF1KA1 MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 FPKDRDYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETH
:::::::::::::::::::::::
CCDS71 FPKDRDYRREVMQATATSGFASG-------------------------------------
190 200
250 260 270 280 290 300
pF1KA1 SSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPA
CCDS71 ------------------------------------------------------------
310 320 330 340 350 360
pF1KA1 QKTERKESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDP
.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ------KSTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDP
210 220 230 240 250
370 380 390 400 410 420
pF1KA1 NLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLI
260 270 280 290 300 310
430 440 450 460 470 480
pF1KA1 SQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLISTPPVSSQPKV
320 330 340 350 360 370
490 500 510 520 530 540
pF1KA1 STPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 STPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSSNASNA
380 390 400 410 420 430
550 560 570 580 590 600
pF1KA1 TVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSE
440 450 460 470 480 490
610 620 630 640
pF1KA1 ICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV
500 510 520 530 540
647 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:40:11 2016 done: Mon Nov 7 04:40:12 2016
Total Scan time: 4.420 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]