Result of FASTA (ccds) for
pFN21AA1417
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1417, 1353 aa
1>>>pF1KA1417 1353 - 1353 aa - 1353 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3672+/-0.00126; mu= 13.3181+/- 0.074
mean_var=178.6693+/-37.510, 0's: 0 Z-trim(104.9): 111 B-trim: 53 in 1/50
Lambda= 0.095951
statistics sampled from 8034 (8134) to 8034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.25), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS34490.1 IBTK gene_id:25998|Hs108|chr6 (1353) 9010 1261.7 0
CCDS75486.1 IBTK gene_id:25998|Hs108|chr6 (1338) 6752 949.1 0
>>CCDS34490.1 IBTK gene_id:25998|Hs108|chr6 (1353 aa)
initn: 9010 init1: 9010 opt: 9010 Z-score: 6751.7 bits: 1261.7 E(32554): 0
Smith-Waterman score: 9010; 100.0% identity (100.0% similar) in 1353 aa overlap (1-1353:1-1353)
10 20 30 40 50 60
pF1KA1 MSSPMPDCTSKCRSLKHALDVLSVVTKGSENQIKAFLSSHCYNAATIKDVFGRNALHLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSSPMPDCTSKCRSLKHALDVLSVVTKGSENQIKAFLSSHCYNAATIKDVFGRNALHLVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SCGKKGVLDWLIQKGVDLLVKDKESGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDKEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SCGKKGVLDWLIQKGVDLLVKDKESGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDKEGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SALDLVMKDRPTHVVFKNTDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDLFSRSGIYIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SALDLVMKDRPTHVVFKNTDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDLFSRSGIYIK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 TVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 REAVYTMGLNGGQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 REAVYTMGLNGGQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 IYLLADYQCKKMASKQLNLKKVLVSGGHMEYKVDPEHLKENGGQKICILAMDGAGRVFCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IYLLADYQCKKMASKQLNLKKVLVSGGHMEYKVDPEHLKENGGQKICILAMDGAGRVFCW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RSVNSSLKQCRWAYPRQVFISDIALNRNEILFVTQDGEGFRGRWFEEKRKSSEKKEILSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSVNSSLKQCRWAYPRQVFISDIALNRNEILFVTQDGEGFRGRWFEEKRKSSEKKEILSN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LHNSSSDVSYVSDINSVYERIRLEKLTFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LHNSSSDVSYVSDINSVYERIRLEKLTFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 VSSSSFFEEFGKLLREADEMDSIHDVTFQVGNRLFPAHKYILAVHSDFFQKLFLSDGNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSSSSFFEEFGKLLREADEMDSIHDVTFQVGNRLFPAHKYILAVHSDFFQKLFLSDGNTS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 EFTDIYQKDEDSAGCHLFVVEKVHPDMFEYLLQFIYTDTCDFLTHGFKPRIHLNKNPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFTDIYQKDEDSAGCHLFVVEKVHPDMFEYLLQFIYTDTCDFLTHGFKPRIHLNKNPEEY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QGTLNSHLNKVNFHEDDNQKSAFEVYKSNQAQTVSERQKSKPKSCKKGKNIREDDPVRML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QGTLNSHLNKVNFHEDDNQKSAFEVYKSNQAQTVSERQKSKPKSCKKGKNIREDDPVRML
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 QTVAKKFDFSNLSSRLDGVRFENEKINVIAKNTGNKLKLSQKKCSFLCDVTMKSVDGKEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QTVAKKFDFSNLSSRLDGVRFENEKINVIAKNTGNKLKLSQKKCSFLCDVTMKSVDGKEF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 PCHKCVLCARLEYFHSMLSSSWIEASSCAALEMPIHSDILKVILDYLYTDEAVVIKESQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PCHKCVLCARLEYFHSMLSSSWIEASSCAALEMPIHSDILKVILDYLYTDEAVVIKESQN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 VDFICSVLVVADQLLITRLKEICEVALTEKLTLKNAAMLLEFAAMYSAKQLKLSCLQFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VDFICSVLVVADQLLITRLKEICEVALTEKLTLKNAAMLLEFAAMYSAKQLKLSCLQFIG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 LNMAALLEARSLDVLSDGVLKDLSEFYRKMIPAMDRRVITPYQDGPDISYLEVEDGDIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LNMAALLEARSLDVLSDGVLKDLSEFYRKMIPAMDRRVITPYQDGPDISYLEVEDGDIFL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 KEEINMEQNHSETMFKKAKTKAKKKPRKRSDSSGGYNLSDIIQSPSSTGLLKSGKTNSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KEEINMEQNHSETMFKKAKTKAKKKPRKRSDSSGGYNLSDIIQSPSSTGLLKSGKTNSVE
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 SLPELLTSDSEGSYAGVGSPRDLQSPDFTTGFHSDKIEAKVKPYVNGTSPVYSREDLKPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLPELLTSDSEGSYAGVGSPRDLQSPDFTTGFHSDKIEAKVKPYVNGTSPVYSREDLKPW
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 EKSPILKISAPQPIPSNRIDTTSSASWVAGSFSPVSPPVVDLRTIMEIEESRQKCGATPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EKSPILKISAPQPIPSNRIDTTSSASWVAGSFSPVSPPVVDLRTIMEIEESRQKCGATPK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 SHLGKTVSHGVKLSQKQRKMIALTTKENNSGMNSMETVLFTPSKAPKPVNAWASSLHSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SHLGKTVSHGVKLSQKQRKMIALTTKENNSGMNSMETVLFTPSKAPKPVNAWASSLHSVS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 SKSFRDFLLEEKKSVTSHSSGDHVKKVSFKGIENSQAPKIVRCSTHGTPGPEGNHISDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKSFRDFLLEEKKSVTSHSSGDHVKKVSFKGIENSQAPKIVRCSTHGTPGPEGNHISDLP
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 LLDSPNPWLSSSVTAPSMVAPVTFASIVEEELQQEAALIRSREKPLALIQIEEHAIQDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLDSPNPWLSSSVTAPSMVAPVTFASIVEEELQQEAALIRSREKPLALIQIEEHAIQDLL
1270 1280 1290 1300 1310 1320
1330 1340 1350
pF1KA1 VFYEAFGNPEEFVIVERTPQGPLAVPMWNKHGC
:::::::::::::::::::::::::::::::::
CCDS34 VFYEAFGNPEEFVIVERTPQGPLAVPMWNKHGC
1330 1340 1350
>>CCDS75486.1 IBTK gene_id:25998|Hs108|chr6 (1338 aa)
initn: 6752 init1: 6752 opt: 6752 Z-score: 5062.5 bits: 949.1 E(32554): 0
Smith-Waterman score: 8879; 98.9% identity (98.9% similar) in 1353 aa overlap (1-1353:1-1338)
10 20 30 40 50 60
pF1KA1 MSSPMPDCTSKCRSLKHALDVLSVVTKGSENQIKAFLSSHCYNAATIKDVFGRNALHLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSSPMPDCTSKCRSLKHALDVLSVVTKGSENQIKAFLSSHCYNAATIKDVFGRNALHLVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SCGKKGVLDWLIQKGVDLLVKDKESGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDKEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SCGKKGVLDWLIQKGVDLLVKDKESGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDKEGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SALDLVMKDRPTHVVFKNTDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDLFSRSGIYIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SALDLVMKDRPTHVVFKNTDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDLFSRSGIYIK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 TVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 REAVYTMGLNGGQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 REAVYTMGLNGGQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 IYLLADYQCKKMASKQLNLKKVLVSGGHMEYKVDPEHLKENGGQKICILAMDGAGRVFCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IYLLADYQCKKMASKQLNLKKVLVSGGHMEYKVDPEHLKENGGQKICILAMDGAGRVFCW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RSVNSSLKQCRWAYPRQVFISDIALNRNEILFVTQDGEGFRGRWFEEKRKSSEKKEILSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RSVNSSLKQCRWAYPRQVFISDIALNRNEILFVTQDGEGFRGRWFEEKRKSSEKKEILSN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LHNSSSDVSYVSDINSVYERIRLEKLTFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LHNSSSDVSYVSDINSVYERIRLEKLTFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 VSSSSFFEEFGKLLREADEMDSIHDVTFQVGNRLFPAHKYILAVHSDFFQKLFLSDGNTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSSSSFFEEFGKLLREADEMDSIHDVTFQVGNRLFPAHKYILAVHSDFFQKLFLSDGNTS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 EFTDIYQKDEDSAGCHLFVVEKVHPDMFEYLLQFIYTDTCDFLTHGFKPRIHLNKNPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EFTDIYQKDEDSAGCHLFVVEKVHPDMFEYLLQFIYTDTCDFLTHGFKPRIHLNKNPEEY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QGTLNSHLNKVNFHEDDNQKSAFEVYKSNQAQTVSERQKSKPKSCKKGKNIREDDPVRML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QGTLNSHLNKVNFHEDDNQKSAFEVYKSNQAQTVSERQKSKPKSCKKGKNIREDDPVRML
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 QTVAKKFDFSNLSSRLDGVRFENEKINVIAKNTGNKLKLSQKKCSFLCDVTMKSVDGKEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QTVAKKFDFSNLSSRLDGVRFENEKINVIAKNTGNKLKLSQKKCSFLCDVTMKSVDGKEF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 PCHKCVLCARLEYFHSMLSSSWIEASSCAALEMPIHSDILKVILDYLYTDEAVVIKESQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PCHKCVLCARLEYFHSMLSSSWIEASSCAALEMPIHSDILKVILDYLYTDEAVVIKESQN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 VDFICSVLVVADQLLITRLKEICEVALTEKLTLKNAAMLLEFAAMYSAKQLKLSCLQFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VDFICSVLVVADQLLITRLKEICEVALTEKLTLKNAAMLLEFAAMYSAKQLKLSCLQFIG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 LNMAALLEARSLDVLSDGVLKDLSEFYRKMIPAMDRRVITPYQDGPDISYLEVEDGDIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LNMAALLEARSLDVLSDGVLKDLSEFYRKMIPAMDRRVITPYQDGPDISYLEVEDGDIFL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 KEEINMEQNHSETMFKKAKTKAKKKPRKRSDSSGGYNLSDIIQSPSSTGLLKSGKTNSVE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KEEINMEQNHSETMFKKAKTKAKKKPRKRSDSSGGYNLSDIIQSPSST------------
970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KA1 SLPELLTSDSEGSYAGVGSPRDLQSPDFTTGFHSDKIEAKVKPYVNGTSPVYSREDLKPW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ---ELLTSDSEGSYAGVGSPRDLQSPDFTTGFHSDKIEAKVKPYVNGTSPVYSREDLKPW
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120 1130 1140
pF1KA1 EKSPILKISAPQPIPSNRIDTTSSASWVAGSFSPVSPPVVDLRTIMEIEESRQKCGATPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKSPILKISAPQPIPSNRIDTTSSASWVAGSFSPVSPPVVDLRTIMEIEESRQKCGATPK
1070 1080 1090 1100 1110 1120
1150 1160 1170 1180 1190 1200
pF1KA1 SHLGKTVSHGVKLSQKQRKMIALTTKENNSGMNSMETVLFTPSKAPKPVNAWASSLHSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SHLGKTVSHGVKLSQKQRKMIALTTKENNSGMNSMETVLFTPSKAPKPVNAWASSLHSVS
1130 1140 1150 1160 1170 1180
1210 1220 1230 1240 1250 1260
pF1KA1 SKSFRDFLLEEKKSVTSHSSGDHVKKVSFKGIENSQAPKIVRCSTHGTPGPEGNHISDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SKSFRDFLLEEKKSVTSHSSGDHVKKVSFKGIENSQAPKIVRCSTHGTPGPEGNHISDLP
1190 1200 1210 1220 1230 1240
1270 1280 1290 1300 1310 1320
pF1KA1 LLDSPNPWLSSSVTAPSMVAPVTFASIVEEELQQEAALIRSREKPLALIQIEEHAIQDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLDSPNPWLSSSVTAPSMVAPVTFASIVEEELQQEAALIRSREKPLALIQIEEHAIQDLL
1250 1260 1270 1280 1290 1300
1330 1340 1350
pF1KA1 VFYEAFGNPEEFVIVERTPQGPLAVPMWNKHGC
:::::::::::::::::::::::::::::::::
CCDS75 VFYEAFGNPEEFVIVERTPQGPLAVPMWNKHGC
1310 1320 1330
1353 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:37:22 2016 done: Mon Nov 7 14:37:23 2016
Total Scan time: 4.170 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]