Result of FASTA (ccds) for
pFN21AA0928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0928, 1922 aa
1>>>pF1KA0928 1922 - 1922 aa - 1922 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3768+/-0.00112; mu= 19.1621+/- 0.068
mean_var=88.4506+/-17.452, 0's: 0 Z-trim(104.8): 57 B-trim: 0 in 0/50
Lambda= 0.136372
statistics sampled from 8020 (8071) to 8020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.248), width: 16
Scan time: 4.410
The best scores are: opt bits E(32554)
CCDS9931.1 DICER1 gene_id:23405|Hs108|chr14 (1922) 12888 2547.0 0
CCDS55941.1 DICER1 gene_id:23405|Hs108|chr14 (1829) 12023 2376.8 0
CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025) 298 69.9 5.8e-11
>>CCDS9931.1 DICER1 gene_id:23405|Hs108|chr14 (1922 aa)
initn: 12888 init1: 12888 opt: 12888 Z-score: 13692.8 bits: 2547.0 E(32554): 0
Smith-Waterman score: 12888; 100.0% identity (100.0% similar) in 1922 aa overlap (1-1922:1-1922)
10 20 30 40 50 60
pF1KA0 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP
1870 1880 1890 1900 1910 1920
pF1KA0 NS
::
CCDS99 NS
>>CCDS55941.1 DICER1 gene_id:23405|Hs108|chr14 (1829 aa)
initn: 12023 init1: 12023 opt: 12023 Z-score: 12773.4 bits: 2376.8 E(32554): 0
Smith-Waterman score: 12023; 100.0% identity (100.0% similar) in 1788 aa overlap (1-1788:1-1788)
10 20 30 40 50 60
pF1KA0 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEKSFLQMYPVPLC
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
CCDS55 ENCLKWNQKLPNLARLRELTTGRSESLWK
1810 1820
>>CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025 aa)
initn: 376 init1: 203 opt: 298 Z-score: 310.4 bits: 69.9 E(32554): 5.8e-11
Smith-Waterman score: 385; 26.8% identity (55.2% similar) in 594 aa overlap (45-589:309-865)
20 30 40 50 60 70
pF1KA0 QLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALD-HNTIVCLNTGSGKTFI
: ::.:. . ::. .: :.:: :::::: .
CCDS22 NMGSDSGTMGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRV
280 290 300 310 320 330
80 90 100 110 120
pF1KA0 AVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK-----VGEYSNLE
:: ..:. . . :. :: .. :::.. ...:. . . :: .: .. .
CCDS22 AVYIAKD-HLDKKKKASEPGK-VIVLVNKV-LLVEQLFRKEFQPFLKKWYRVIGLSGDTQ
340 350 360 370 380 390
130 140 150 160 170 180
pF1KA0 VNASWTKERWNQEFTKH-QVLIMTCYVALNVL---KNGY---LSLSDINLLVFDECHLAI
.. :. : .: ...: : . : : .:: ..:::..:...:::: .
CCDS22 LKISFP------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN
400 410 420 430 440
190 200 210 220
pF1KA0 LDHPYREIM------KLC------ENCP--SCPRILGLTASI-LNGKCDPEELEEKIQKL
. : .:: :: :: : :.::::::: ..: . ::.: ::
CCDS22 KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKL
450 460 470 480 490 500
230 240 250 260 270 280
pF1KA0 EKILKS-NAETATD-LVVLDRYTSQPCE--IVVDCGPFTDRSGLYERLLMELEEALNFIN
: . . .:. . : : ..::. ..: : .. . :.:: . . ..
CCDS22 CANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA---TREDPFKEKLLEIMTRIQTY--
510 520 530 540 550 560
290 300 310 320 330 340
pF1KA0 DCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ-EELH
:..: : . . : . .:. ... . ...:.:: . : ..
CCDS22 -CQMSPMSDFGTQPYEQWAIQMEKKAAK------EGNRKERVCAEHLRKYNEALQINDTI
570 580 590 600 610
350 360 370 380 390
pF1KA0 RKFLLFT--DTFLR----KIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQF
: . .: .:: : :. :. : . : .. . .. . : : ..:
CCDS22 RMIDAYTHLETFYNEEKDKKFAVIEDD-SDEGGDDEYCDGDEDED-DLKKPLKLDETDRF
620 630 640 650 660 670
400 410 420 430 440 450
pF1KA0 ESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC---GIIFVERRY
. ...: .. . .. .. . : :. : .... .: ::::.. :
CCDS22 LMTLFFENNKMLKRLA------ENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQ
680 690 700 710 720
460 470 480 490 500 510
pF1KA0 TAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHE
.: .:.. : : ... :.. . ..: : :... . . . : :.::. :::. .
CCDS22 SAYALSQWITE-NEKFAEVGVKAHHLI---GAGHSSEFKPMTQNE---QKEVISKFRTGK
730 740 750 760 770 780
520 530 540 550 560
pF1KA0 TNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADT------
::::::...:::.:: .::.:.:. : :. ..::..::::: :.:...: .
CCDS22 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIE
790 800 810 820 830 840
570 580 590 600 610 620
pF1KA0 -DKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPRV
. ...:.: . ::::. . :
CCDS22 HETVNDFREKM-MYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPS
850 860 870 880 890 900
1922 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:44:22 2016 done: Sun Nov 6 20:44:23 2016
Total Scan time: 4.410 Total Display time: 0.270
Function used was FASTA [36.3.4 Apr, 2011]