Result of FASTA (ccds) for
pFN21AA0898
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0898, 964 aa
1>>>pF1KA0898 964 - 964 aa - 964 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5176+/-0.000943; mu= 11.8352+/- 0.057
mean_var=146.2698+/-29.740, 0's: 0 Z-trim(109.9): 81 B-trim: 0 in 0/52
Lambda= 0.106047
statistics sampled from 11102 (11183) to 11102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.344), width: 16
Scan time: 5.010
The best scores are: opt bits E(32554)
CCDS32694.1 TRIM37 gene_id:4591|Hs108|chr17 ( 964) 6419 994.5 0
CCDS45746.1 TRIM37 gene_id:4591|Hs108|chr17 ( 964) 6419 994.5 0
CCDS82174.1 TRIM37 gene_id:4591|Hs108|chr17 ( 930) 6117 948.3 0
>>CCDS32694.1 TRIM37 gene_id:4591|Hs108|chr17 (964 aa)
initn: 6419 init1: 6419 opt: 6419 Z-score: 5313.3 bits: 994.5 E(32554): 0
Smith-Waterman score: 6419; 100.0% identity (100.0% similar) in 964 aa overlap (1-964:1-964)
10 20 30 40 50 60
pF1KA0 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
910 920 930 940 950 960
pF1KA0 NSGR
::::
CCDS32 NSGR
>>CCDS45746.1 TRIM37 gene_id:4591|Hs108|chr17 (964 aa)
initn: 6419 init1: 6419 opt: 6419 Z-score: 5313.3 bits: 994.5 E(32554): 0
Smith-Waterman score: 6419; 100.0% identity (100.0% similar) in 964 aa overlap (1-964:1-964)
10 20 30 40 50 60
pF1KA0 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
910 920 930 940 950 960
pF1KA0 NSGR
::::
CCDS45 NSGR
>>CCDS82174.1 TRIM37 gene_id:4591|Hs108|chr17 (930 aa)
initn: 6117 init1: 6117 opt: 6117 Z-score: 5063.9 bits: 948.3 E(32554): 0
Smith-Waterman score: 6117; 99.8% identity (100.0% similar) in 925 aa overlap (40-964:6-930)
10 20 30 40 50 60
pF1KA0 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA
..::::::::::::::::::::::::::::
CCDS82 MDEQSVERWLTEQRAQCPHCRAPLQLRELVNCRWA
10 20 30
70 80 90 100 110 120
pF1KA0 EEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA0 KPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMM
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA0 IARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA0 QVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA0 LKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEV
280 290 300 310 320 330
370 380 390 400 410 420
pF1KA0 GECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYITQLEAAQTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYITQLEAAQTSY
340 350 360 370 380 390
430 440 450 460 470 480
pF1KA0 IQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDMLLEGGPTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDMLLEGGPTTA
400 410 420 430 440 450
490 500 510 520 530 540
pF1KA0 SVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASSTATSNTEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASSTATSNTEEN
460 470 480 490 500 510
550 560 570 580 590 600
pF1KA0 DIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRRTHLCSAATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRRTHLCSAATS
520 530 540 550 560 570
610 620 630 640 650 660
pF1KA0 SLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQRKQQAMWRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQRKQQAMWRVP
580 590 600 610 620 630
670 680 690 700 710 720
pF1KA0 SDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAALAACGTENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAALAACGTENS
640 650 660 670 680 690
730 740 750 760 770 780
pF1KA0 GRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDPGENSRSKGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDPGENSRSKGD
700 710 720 730 740 750
790 800 810 820 830 840
pF1KA0 CQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVVAVFSGLPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVVAVFSGLPAV
760 770 780 790 800 810
850 860 870 880 890 900
pF1KA0 EKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECD
820 830 840 850 860 870
910 920 930 940 950 960
pF1KA0 TENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDENSGR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDENSGR
880 890 900 910 920 930
964 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:35:19 2016 done: Mon Nov 7 03:35:20 2016
Total Scan time: 5.010 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]