Result of FASTA (ccds) for
pFN21AA0166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0166, 2209 aa
1>>>pF1KA0166 2209 - 2209 aa - 2209 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4255+/-0.00141; mu= 18.7433+/- 0.085
mean_var=67.3267+/-13.265, 0's: 0 Z-trim(98.1): 43 B-trim: 0 in 0/50
Lambda= 0.156308
statistics sampled from 5239 (5251) to 5239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.485), E-opt: 0.2 (0.161), width: 16
Scan time: 6.620
The best scores are: opt bits E(32554)
CCDS45002.1 KNTC1 gene_id:9735|Hs108|chr12 (2209) 14318 3239.1 0
>>CCDS45002.1 KNTC1 gene_id:9735|Hs108|chr12 (2209 aa)
initn: 14318 init1: 14318 opt: 14318 Z-score: 17430.8 bits: 3239.1 E(32554): 0
Smith-Waterman score: 14318; 100.0% identity (100.0% similar) in 2209 aa overlap (1-2209:1-2209)
10 20 30 40 50 60
pF1KA0 MWNDIELLTNDDTGSGYLSVGSRKEHGTALYQVDLLVKISSEKASLNPKIQACSLSDGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MWNDIELLTNDDTGSGYLSVGSRKEHGTALYQVDLLVKISSEKASLNPKIQACSLSDGFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IVADQSVILLDSICRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IVADQSVILLDSICRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 TNAFVQKANDENRRTYQNLVIEKDGSNEGTYYMLLLTYSGFFCITNLQLLKIQQAIENVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TNAFVQKANDENRRTYQNLVIEKDGSNEGTYYMLLLTYSGFFCITNLQLLKIQQAIENVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 FSTAKKLQGQIKSSFISTENYHTLGCLSLVAGDLASEVPVIIGGTGNCAFSKWEPDSSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FSTAKKLQGQIKSSFISTENYHTLGCLSLVAGDLASEVPVIIGGTGNCAFSKWEPDSSKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 GMTVKNLIDAEIIKGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPVWNWPSLHVEEFLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GMTVKNLIDAEIIKGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPVWNWPSLHVEEFLLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 TEADSPSSVTWQGITNLKLIALTASANKKMKNLMVYSLPTMEILYSLEVSSVSSLVQTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TEADSPSSVTWQGITNLKLIALTASANKKMKNLMVYSLPTMEILYSLEVSSVSSLVQTGI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 STDTIYLLEGVCKNDPKLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 STDTIYLLEGVCKNDPKLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 LDVELVYKVKSNHILEKLALSSVDASEQTEWQQLVDDAKENLHKIQDDEFVVNYCLKAQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LDVELVYKVKSNHILEKLALSSVDASEQTEWQQLVDDAKENLHKIQDDEFVVNYCLKAQW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 ITYETTQEMLNYAKTRLLKKEDKTALIYSDGLKEVLRAHAKLTTFYGAFGPEKFSGSSWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ITYETTQEMLNYAKTRLLKKEDKTALIYSDGLKEVLRAHAKLTTFYGAFGPEKFSGSSWI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 EFLNNEDDLKDIFLQLKEGNLVCAQYLWLRHRANFESRFDVKMLESLLNSMSASVSLQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EFLNNEDDLKDIFLQLKEGNLVCAQYLWLRHRANFESRFDVKMLESLLNSMSASVSLQKL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 CPWFKNDVIPFVRRTVPEGQIILAKWLEQAARNLELTDKANWPENGLQLAEIFFTAEKTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CPWFKNDVIPFVRRTVPEGQIILAKWLEQAARNLELTDKANWPENGLQLAEIFFTAEKTD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ELGLASSWHWISLKDYQNTEEVCQLRTLVNNLRELITLHRKYNCKLALSDFEKENTTTIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ELGLASSWHWISLKDYQNTEEVCQLRTLVNNLRELITLHRKYNCKLALSDFEKENTTTIV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 FRMFDKVLAPELIPSILEKFIRVYMREHDLQEEELLLLYIEDLLNRCSSKSTSLFETAWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FRMFDKVLAPELIPSILEKFIRVYMREHDLQEEELLLLYIEDLLNRCSSKSTSLFETAWE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 AKAMAVIACLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AKAMAVIACLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLM
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 EMKKLLRGYGIREVNLLNKEIMRVVRYILKQDVPSSLEDALKVAQAFMLSDDEIYSLRII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EMKKLLRGYGIREVNLLNKEIMRVVRYILKQDVPSSLEDALKVAQAFMLSDDEIYSLRII
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 DLIDREQGEDCLLLLKSLPPAEAEKTAERVIIWARLALQEEPDHSKEGKAWRMSVAKTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DLIDREQGEDCLLLLKSLPPAEAEKTAERVIIWARLALQEEPDHSKEGKAWRMSVAKTSV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 DILKILCDIQKDNLQKKDECEEMLKLFKEVASLQENFEVFLSFEDYSNSSLVADLREQHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DILKILCDIQKDNLQKKDECEEMLKLFKEVASLQENFEVFLSFEDYSNSSLVADLREQHI
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 KAHEVAQAKHKPGSTPEPIAAEVRSPSMESKLHRQALALQMSKQELEAELTLRALKDGNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KAHEVAQAKHKPGSTPEPIAAEVRSPSMESKLHRQALALQMSKQELEAELTLRALKDGNI
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 KTALKKCSDLFKYHCNADTGKLLFLTCQKLCQMLADNVPVTVPVGLNLPSMIHDLASQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KTALKKCSDLFKYHCNADTGKLLFLTCQKLCQMLADNVPVTVPVGLNLPSMIHDLASQAA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 TICSPDFLLDALELCKHTLMAVELSRQCQMDDCGILMKASFGTHKDPYEEWSYSDFFSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TICSPDFLLDALELCKHTLMAVELSRQCQMDDCGILMKASFGTHKDPYEEWSYSDFFSED
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 GIVLESQMVLPVIYELISSLVPLAESKRYPLESTSLPYCSLNEGDGLVLPVINSISALLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GIVLESQMVLPVIYELISSLVPLAESKRYPLESTSLPYCSLNEGDGLVLPVINSISALLQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 NLQESSQWELALRFVVGSFGTCLQHSVSNFMNATLSEKLFGETTLVKSRHVVMELKEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLQESSQWELALRFVVGSFGTCLQHSVSNFMNATLSEKLFGETTLVKSRHVVMELKEKAV
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 IFIRENATTLLHKVFNCRLVDLDLALGYCTLLPQKDVFENLWKLIDKAWQNYDKILAISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IFIRENATTLLHKVFNCRLVDLDLALGYCTLLPQKDVFENLWKLIDKAWQNYDKILAISL
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 VGSELASLYQEIEMGLKFRELSTDAQWGIRLGKLGISFQPVFRQHFLTKKDLIKALVENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VGSELASLYQEIEMGLKFRELSTDAQWGIRLGKLGISFQPVFRQHFLTKKDLIKALVENI
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 DMDTSLILEYCSTFQLDCDAVLQLFIETLLHNTNAGQGQGDASMDSAKRRHPKLLAKALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DMDTSLILEYCSTFQLDCDAVLQLFIETLLHNTNAGQGQGDASMDSAKRRHPKLLAKALE
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 MVPLLTSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSILKHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVPLLTSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSILKHLK
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 SYRRISPPVDLEYQYMLEHVITLPSAAQTRLPFHLIFFGTAQNFWKILSTELSEESFPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SYRRISPPVDLEYQYMLEHVITLPSAAQTRLPFHLIFFGTAQNFWKILSTELSEESFPTL
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 LLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLKLTQAKSSTLINKEITKITQTIESCLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLKLTQAKSSTLINKEITKITQTIESCLLS
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 IVNPEWAVAIAISLAQDIPEGSFKISALKFCLYLAERWLQNIPSQDEKREKAEALLKKLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IVNPEWAVAIAISLAQDIPEGSFKISALKFCLYLAERWLQNIPSQDEKREKAEALLKKLH
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 IQYRRSGTEAVLIAHKLNTEEYLRVIGKPAHLIVSLYEHPSINQRIQNSSGTDYPDIHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IQYRRSGTEAVLIAHKLNTEEYLRVIGKPAHLIVSLYEHPSINQRIQNSSGTDYPDIHAA
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 AKEIAEVNEINLEKVWDMLLEKWLCPSTKPGEKPSELFELQEDEALRRVQYLLLSRPIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AKEIAEVNEINLEKVWDMLLEKWLCPSTKPGEKPSELFELQEDEALRRVQYLLLSRPIDY
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 SSRMLFVFATSTTTTLGMHQLTFAHRTRALQCLFYLADKETIESLFKKPIEEVKSYLRCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSRMLFVFATSTTTTLGMHQLTFAHRTRALQCLFYLADKETIESLFKKPIEEVKSYLRCI
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KA0 TFLASFETLNIPITYELFCSSPKEGMIKGLWKNHSHESMAVRLVTELCLEYKIYDLQLWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TFLASFETLNIPITYELFCSSPKEGMIKGLWKNHSHESMAVRLVTELCLEYKIYDLQLWN
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KA0 GLLQKLLGFNMIPYLRKVLKAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPDQLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLLQKLLGFNMIPYLRKVLKAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPDQLSD
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080 2090 2100
pF1KA0 CSESLIAVLECPVSGDLDLIGVARQYIQLELPAFALACLMLMPHSEKRHQQIKNFLGSCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CSESLIAVLECPVSGDLDLIGVARQYIQLELPAFALACLMLMPHSEKRHQQIKNFLGSCD
2050 2060 2070 2080 2090 2100
2110 2120 2130 2140 2150 2160
pF1KA0 PQVILKQLEEHMNTGQLAGFSHQIRSLILNNIINKKEFGILAKTKYFQMLKMHAMNTNNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQVILKQLEEHMNTGQLAGFSHQIRSLILNNIINKKEFGILAKTKYFQMLKMHAMNTNNI
2110 2120 2130 2140 2150 2160
2170 2180 2190 2200
pF1KA0 TELVNYLANDLSLDEASVLITEYSKHCGKPVPPDTAPCEILKMFLSGLS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TELVNYLANDLSLDEASVLITEYSKHCGKPVPPDTAPCEILKMFLSGLS
2170 2180 2190 2200
2209 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:45:45 2016 done: Tue Nov 8 10:45:46 2016
Total Scan time: 6.620 Total Display time: 0.260
Function used was FASTA [36.3.4 Apr, 2011]