(Linear) (Six-base) MAPSORT of: KIBB7277.seq Check: 61 from: 1 to: 3864
KIBB7277.orf
With 182 enzymes: SgfI *
July 15, 2010 18:31 ..
AatII G_ACGT'C
Cuts at: 0 1796 3864
Size: 1796 2068
AccI GT'mk_AC
Cuts at: 0 143 3864
Size: 143 3721
Acc65I G'GTAC_C
Cuts at: 0 1415 3864
Size: 1415 2449
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 0 399 1077 1443 2242 2328 2786 3864
Size: 399 678 366 799 86 458 1078
Fragments arranged by size:
1078 799 678 458 399 366 86
AfeI AGC'GCT
Cuts at: 0 1756 2881 3041 3864
Size: 1756 1125 160 823
Fragments arranged by size:
1756 1125 823 160
AflII C'TTAA_G
Cuts at: 0 2152 3864
Size: 2152 1712
AflIII A'CryG_T
Cuts at: 0 1085 3864
Size: 1085 2779
AhdI GACnn_n'nnGTC
Cuts at: 0 2496 3864
Size: 2496 1368
AleI CACnn'nnGTG
Cuts at: 0 398 1366 2011 3864
Size: 398 968 645 1853
Fragments arranged by size:
1853 968 645 398
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 0 2038 2070 3864
Size: 2038 32 1794
Fragments arranged by size:
2038 1794 32
AlwNI CAG_nnn'CTG
Cuts at: 0 47 474 774 2067 2265 2697 3033 3174
Size: 47 427 300 1293 198 432 336 141
Cuts at: 3174 3517 3567 3591 3660 3681 3864
Size: 343 50 24 69 21 183
Fragments arranged by size:
1293 432 427 343 336 300 198 183
141 69 50 47 24 21
ApaI G_GGCC'C
Cuts at: 0 2467 3087 3204 3475 3864
Size: 2467 620 117 271 389
Fragments arranged by size:
2467 620 389 271 117
ApaLI G'TGCA_C
Cuts at: 0 2302 3864
Size: 2302 1562
AvaI C'yCGr_G
Cuts at: 0 102 155 169 175 182 1098 1621 2554
Size: 102 53 14 6 7 916 523 933
Cuts at: 2554 2920 3127 3463 3758 3864
Size: 366 207 336 295 106
Fragments arranged by size:
933 916 523 366 336 295 207 106
102 53 14 7 6
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 0 3541 3574 3864
Size: 3541 33 290
Fragments arranged by size:
3541 290 33
BamHI G'GATC_C
Cuts at: 0 3838 3864
Size: 3838 26
BanI G'GyrC_C
Cuts at: 0 96 1044 1118 1415 1878 2374 2847 2899
Size: 96 948 74 297 463 496 473 52
Cuts at: 2899 2916 3697 3864
Size: 17 781 167
Fragments arranged by size:
948 781 496 473 463 297 167 96
74 52 17
BanII G_rGCy'C
Cuts at: 0 176 820 1039 1169 1244 1341 1478 2131
Size: 176 644 219 130 75 97 137 653
Cuts at: 2131 2467 2555 2563 3087 3204 3433 3448 3464
Size: 336 88 8 524 117 229 15 16
Cuts at: 3464 3475 3582 3864
Size: 11 107 282
Fragments arranged by size:
653 644 524 336 282 229 219 176
137 130 117 107 97 88 75 16
15 11 8
BbeI G_GCGC'C
Cuts at: 0 100 1048 1882 3864
Size: 100 948 834 1982
Fragments arranged by size:
1982 948 834 100
BbvCI CC'TCA_GC
Cuts at: 0 3196 3864
Size: 3196 668
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 0 2911 2926 2945 2960 3864
Size: 2911 15 19 15 904
Fragments arranged by size:
2911 904 19 15 15
BclI T'GATC_A
Cuts at: 0 2333 3864
Size: 2333 1531
BglI GCCn_nnn'nGGC
Cuts at: 0 2144 3010 3823 3864
Size: 2144 866 813 41
Fragments arranged by size:
2144 866 813 41
BglII A'GATC_T
Cuts at: 0 2156 3864
Size: 2156 1708
BlpI GC'TnA_GC
Cuts at: 0 73 133 814 2130 2971 3322 3496 3864
Size: 73 60 681 1316 841 351 174 368
Fragments arranged by size:
1316 841 681 368 351 174 73 60
Bme1580I G_kGCm'C
Cuts at: 0 1121 1503 1560 1823 1972 2306 2467 2842
Size: 1121 382 57 263 149 334 161 375
Cuts at: 2842 2902 2921 3087 3135 3204 3475 3864
Size: 60 19 166 48 69 271 389
Fragments arranged by size:
1121 389 382 375 334 271 263 166
161 149 69 60 57 48 19
BmrI ACTGGGnnnn_n'
Cuts at: 0 1323 1636 1705 2512 2814 3864
Size: 1323 313 69 807 302 1050
Fragments arranged by size:
1323 1050 807 313 302 69
BmtI G_CTAG'C
Cuts at: 0 2138 3864
Size: 2138 1726
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 0 3399 3784 3864
Size: 3399 385 80
Fragments arranged by size:
3399 385 80
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 0 316 373 635 691 1502 1609 1680 1690
Size: 316 57 262 56 811 107 71 10
Cuts at: 1690 2198 3831 3864
Size: 508 1633 33
Fragments arranged by size:
1633 811 508 316 262 107 71 57
56 33 10
Bpu10I CC'TnA_GC
Cuts at: 0 1660 1787 3196 3864
Size: 1660 127 1409 668
Fragments arranged by size:
1660 1409 668 127
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 0 1051 2341 3525 3864
Size: 1051 1290 1184 339
Fragments arranged by size:
1290 1184 1051 339
BsaI GGTCTCn'nnnn_
Cuts at: 0 703 1429 1672 2407 3387 3864
Size: 703 726 243 735 980 477
Fragments arranged by size:
980 735 726 703 477 243
BsaAI yAC'GTr
Cuts at: 0 147 1973 3864
Size: 147 1826 1891
Fragments arranged by size:
1891 1826 147
BsaHI Gr'CG_yC
Cuts at: 0 97 1045 1793 1879 2094 3864
Size: 97 948 748 86 215 1770
Fragments arranged by size:
1770 948 748 215 97 86
BsaWI w'CCGG_w
Cuts at: 0 968 1866 2952 3360 3453 3864
Size: 968 898 1086 408 93 411
Fragments arranged by size:
1086 968 898 411 408 93
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 0 1678 1708 2932 2962 3782 3812 3864
Size: 1678 30 1224 30 820 30 52
Fragments arranged by size:
1678 1224 820 52 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 0 427 1192 1903 2638 2938 2953 2971 3412
Size: 427 765 711 735 300 15 18 441
Cuts at: 3412 3470 3864
Size: 58 394
Fragments arranged by size:
765 735 711 441 427 394 300 58
18 15
BseYI C'CCAG_C
Cuts at: 0 1114 1168 1263 1810 1959 2614 2700 2743
Size: 1114 54 95 547 149 655 86 43
Cuts at: 2743 2866 3422 3864
Size: 123 556 442
Fragments arranged by size:
1114 655 556 547 442 149 123 95
86 54 43
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 0 880 2493 2965 3040 3211 3511 3592 3685
Size: 880 1613 472 75 171 300 81 93
Cuts at: 3685 3864
Size: 179
Fragments arranged by size:
1613 880 472 300 179 171 93 81
75
BsiEI CG_ry'CG
Cuts at: 0 130 253 259 2001 2206 2630 2936 3864
Size: 130 123 6 1742 205 424 306 928
Fragments arranged by size:
1742 928 424 306 205 130 123 6
BsiHKAI G_wGCw'C
Cuts at: 0 437 1202 1244 2239 2306 2555 3864
Size: 437 765 42 995 67 249 1309
Fragments arranged by size:
1309 995 765 437 249 67 42
BsmBI CGTCTCn'nnnn_
Cuts at: 0 886 1933 2954 3864
Size: 886 1047 1021 910
Fragments arranged by size:
1047 1021 910 886
Bsp1286I G_dGCh'C
Cuts at: 0 176 437 820 1039 1121 1169 1202 1244
Size: 176 261 383 219 82 48 33 42
Cuts at: 1244 1341 1478 1503 1560 1823 1972 2131 2239
Size: 97 137 25 57 263 149 159 108
Cuts at: 2239 2306 2467 2555 2563 2842 2902 2921 3087
Size: 67 161 88 8 279 60 19 166
Cuts at: 3087 3135 3204 3433 3448 3464 3475 3582 3864
Size: 48 69 229 15 16 11 107 282
Fragments arranged by size:
383 282 279 263 261 229 219 176
166 161 159 149 137 108 107 97
88 82 69 67 60 57 48 48
42 33 25 19 16 15 11 8
BspEI T'CCGG_A
Cuts at: 0 2952 3864
Size: 2952 912
BspHI T'CATG_A
Cuts at: 0 830 3864
Size: 830 3034
BspMI ACCTGCnnnn'nnnn_
Cuts at: 0 231 473 2042 3864
Size: 231 242 1569 1822
Fragments arranged by size:
1822 1569 242 231
BsrBI CCG'CTC
Cuts at: 0 132 744 1950 2043 3478 3864
Size: 132 612 1206 93 1435 386
Fragments arranged by size:
1435 1206 612 386 132 93
BsrDI GCAATG_nn'
Cuts at: 0 1205 3864
Size: 1205 2659
BsrFI r'CCGG_y
Cuts at: 0 37 83 125 653 3155 3864
Size: 37 46 42 528 2502 709
Fragments arranged by size:
2502 709 528 46 42 37
BsrGI T'GTAC_A
Cuts at: 0 2591 3864
Size: 2591 1273
BssHII G'CGCG_C
Cuts at: 0 33 116 236 3864
Size: 33 83 120 3628
Fragments arranged by size:
3628 120 83 33
BssSI C'ACGA_G
Cuts at: 0 2007 2548 3864
Size: 2007 541 1316
Fragments arranged by size:
2007 1316 541
BstAPI GCAn_nnn'nTGC
Cuts at: 0 474 906 1289 3033 3864
Size: 474 432 383 1744 831
Fragments arranged by size:
1744 831 474 432 383
BstXI CCAn_nnnn'nTGG
Cuts at: 0 1114 1368 2388 3211 3864
Size: 1114 254 1020 823 653
Fragments arranged by size:
1114 1020 823 653 254
BstYI r'GATC_y
Cuts at: 0 1343 2033 2156 2261 3266 3284 3838 3864
Size: 1343 690 123 105 1005 18 554 26
Fragments arranged by size:
1343 1005 690 554 123 105 26 18
Bsu36I CC'TnA_GG
Cuts at: 0 2843 3864
Size: 2843 1021
BtgI C'CryG_G
Cuts at: 0 65 253 311 1874 1883 2764 3864
Size: 65 188 58 1563 9 881 1100
Fragments arranged by size:
1563 1100 881 188 65 58 9
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 0 869 2004 3864
Size: 869 1135 1860
Fragments arranged by size:
1860 1135 869
BtsI GCAGTG_nn'
Cuts at: 0 1821 2695 3316 3673 3864
Size: 1821 874 621 357 191
Fragments arranged by size:
1821 874 621 357 191
DraIII CAC_nnn'GTG
Cuts at: 0 1498 2301 3864
Size: 1498 803 1563
Fragments arranged by size:
1563 1498 803
EaeI y'GGCC_r
Cuts at: 0 62 127 250 256 545 872 923 1068
Size: 62 65 123 6 289 327 51 145
Cuts at: 1068 2525 2627 2933 3011 3864
Size: 1457 102 306 78 853
Fragments arranged by size:
1457 853 327 306 289 145 123 102
78 65 62 51 6
EagI C'GGCC_G
Cuts at: 0 127 250 256 2627 2933 3864
Size: 127 123 6 2371 306 931
Fragments arranged by size:
2371 931 306 127 123 6
EarI CTCTTCn'nnn_
Cuts at: 0 2069 2090 3104 3864
Size: 2069 21 1014 760
Fragments arranged by size:
2069 1014 760 21
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 0 43 214 1909 2594 3061 3864
Size: 43 171 1695 685 467 803
Fragments arranged by size:
1695 803 685 467 171 43
EcoICRI GAG'CTC
Cuts at: 0 1242 2553 3864
Size: 1242 1311 1311
Fragments arranged by size:
1311 1311 1242
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 0 316 373 399 635 691 1077 1443 1502
Size: 316 57 26 236 56 386 366 59
Cuts at: 1502 1609 1680 1690 2198 2242 2328 2786 3831
Size: 107 71 10 508 44 86 458 1045
Cuts at: 3831 3864
Size: 33
Fragments arranged by size:
1045 508 458 386 366 316 236 107
86 71 59 57 56 44 33 26
10
EcoNI CCTnn'n_nnAGG
Cuts at: 0 226 478 670 1846 3864
Size: 226 252 192 1176 2018
Fragments arranged by size:
2018 1176 252 226 192
EcoO109I rG'GnC_Cy
Cuts at: 0 54 243 471 588 630 999 2215 2463
Size: 54 189 228 117 42 369 1216 248
Cuts at: 2463 2706 3083 3200 3207 3471 3472 3564 3657
Size: 243 377 117 7 264 1 92 93
Cuts at: 3657 3864
Size: 207
Fragments arranged by size:
1216 377 369 264 248 243 228 207
189 117 117 93 92 54 42 7
1
FspI TGC'GCA
Cuts at: 0 274 2017 3864
Size: 274 1743 1847
Fragments arranged by size:
1847 1743 274
FspAI rTGC'GCAy
Cuts at: 0 2017 3864
Size: 2017 1847
HaeII r_GCGC'y
Cuts at: 0 73 100 1048 1739 1758 1882 2690 2883
Size: 73 27 948 691 19 124 808 193
Cuts at: 2883 3043 3184 3282 3864
Size: 160 141 98 582
Fragments arranged by size:
948 808 691 582 193 160 141 124
98 73 27 19
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 0 1328 1360 1678 1710 2482 2514 2932 2964
Size: 1328 32 318 32 772 32 418 32
Cuts at: 2964 2982 3014 3864
Size: 18 32 850
Fragments arranged by size:
1328 850 772 418 318 32 32 32
32 32 18
KasI G'GCGC_C
Cuts at: 0 96 1044 1878 3864
Size: 96 948 834 1986
Fragments arranged by size:
1986 948 834 96
KpnI G_GTAC'C
Cuts at: 0 1419 3864
Size: 1419 2445
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 0 1895 3658 3864
Size: 1895 1763 206
Fragments arranged by size:
1895 1763 206
MscI TGG'CCA
Cuts at: 0 2527 3864
Size: 2527 1337
MslI CAynn'nnrTG
Cuts at: 0 398 829 1366 2011 2521 2835 3706 3864
Size: 398 431 537 645 510 314 871 158
Fragments arranged by size:
871 645 537 510 431 398 314 158
MspA1I CmG'CkG
Cuts at: 0 44 60 207 255 270 313 762 789
Size: 44 16 147 48 15 43 449 27
Cuts at: 789 1020 1195 1389 1700 1800 1885 2488 3237
Size: 231 175 194 311 100 85 603 749
Cuts at: 3237 3495 3576 3588 3864
Size: 258 81 12 276
Fragments arranged by size:
749 603 449 311 276 258 231 194
175 147 100 85 81 48 44 43
27 16 15 12
NaeI GCC'GGC
Cuts at: 0 39 85 127 655 3157 3864
Size: 39 46 42 528 2502 707
Fragments arranged by size:
2502 707 528 46 42 39
NarI GG'CG_CC
Cuts at: 0 97 1045 1879 3864
Size: 97 948 834 1985
Fragments arranged by size:
1985 948 834 97
NdeI CA'TA_TG
Cuts at: 0 1411 1723 3864
Size: 1411 312 2141
Fragments arranged by size:
2141 1411 312
NgoMIV G'CCGG_C
Cuts at: 0 37 83 125 653 3155 3864
Size: 37 46 42 528 2502 709
Fragments arranged by size:
2502 709 528 46 42 37
NheI G'CTAG_C
Cuts at: 0 2134 3864
Size: 2134 1730
NotI GC'GGCC_GC
Cuts at: 0 256 3864
Size: 256 3608
NspI r_CATG'y
Cuts at: 0 1065 1089 2761 3864
Size: 1065 24 1672 1103
Fragments arranged by size:
1672 1103 1065 24
PasI CC'CwG_GG
Cuts at: 0 1560 3204 3345 3864
Size: 1560 1644 141 519
Fragments arranged by size:
1644 1560 519 141
PciI A'CATG_T
Cuts at: 0 1085 3864
Size: 1085 2779
PflMI CCAn_nnn'nTGG
Cuts at: 0 1575 3567 3660 3864
Size: 1575 1992 93 204
Fragments arranged by size:
1992 1575 204 93
PfoI T'CCnGG_A
Cuts at: 0 704 1106 1586 2036 3248 3864
Size: 704 402 480 450 1212 616
Fragments arranged by size:
1212 704 616 480 450 402
PpuMI rG'GwC_Cy
Cuts at: 0 54 243 2215 2706 3864
Size: 54 189 1972 491 1158
Fragments arranged by size:
1972 1158 491 189 54
PshAI GACnn'nnGTC
Cuts at: 0 3613 3864
Size: 3613 251
PspOMI G'GGCC_C
Cuts at: 0 2463 3083 3200 3471 3864
Size: 2463 620 117 271 393
Fragments arranged by size:
2463 620 393 271 117
PspXI vC'TCGA_Gb
Cuts at: 0 175 1621 3864
Size: 175 1446 2243
Fragments arranged by size:
2243 1446 175
PstI C_TGCA'G
Cuts at: 0 470 788 902 1383 2270 2435 2720 3864
Size: 470 318 114 481 887 165 285 1144
Fragments arranged by size:
1144 887 481 470 318 285 165 114
PvuI CG_AT'CG
Cuts at: 0 2001 3864
Size: 2001 1863
PvuII CAG'CTG
Cuts at: 0 44 270 762 1195 1389 1700 1800 2488
Size: 44 226 492 433 194 311 100 688
Cuts at: 2488 3495 3864
Size: 1007 369
Fragments arranged by size:
1007 688 492 433 369 311 226 194
100 44
RsrII CG'GwC_CG
Cuts at: 0 20 3864
Size: 20 3844
SacI G_AGCT'C
Cuts at: 0 1244 2555 3864
Size: 1244 1311 1309
Fragments arranged by size:
1311 1309 1244
SacII CC_GC'GG
Cuts at: 0 256 314 1886 3864
Size: 256 58 1572 1978
Fragments arranged by size:
1978 1572 256 58
SanDI GG'GwC_CC
Cuts at: 0 2215 2706 3864
Size: 2215 491 1158
Fragments arranged by size:
2215 1158 491
SapI GCTCTTCn'nnn_
Cuts at: 0 2090 3104 3864
Size: 2090 1014 760
Fragments arranged by size:
2090 1014 760
SbfI CC_TGCA'GG
Cuts at: 0 470 2270 3864
Size: 470 1800 1594
Fragments arranged by size:
1800 1594 470
SexAI A'CCwGG_T
Cuts at: 0 1418 3864
Size: 1418 2446
SfcI C'TryA_G
Cuts at: 0 466 784 898 1379 1525 2266 2431 2716
Size: 466 318 114 481 146 741 165 285
Cuts at: 2716 3583 3673 3864
Size: 867 90 191
Fragments arranged by size:
867 741 481 466 318 285 191 165
146 114 90
SfiI GGCCn_nnn'nGGCC
Cuts at: 0 3010 3864
Size: 3010 854
SfoI GGC'GCC
Cuts at: 0 98 1046 1880 3864
Size: 98 948 834 1984
Fragments arranged by size:
1984 948 834 98
SmaI CCC'GGG
Cuts at: 0 104 157 171 3864
Size: 104 53 14 3693
Fragments arranged by size:
3693 104 53 14
SmlI C'TyrA_G
Cuts at: 0 175 1030 1621 2152 2356 3504 3758 3864
Size: 175 855 591 531 204 1148 254 106
Fragments arranged by size:
1148 855 591 531 254 204 175 106
SrfI GCCC'GGGC
Cuts at: 0 171 3864
Size: 171 3693
StuI AGG'CCT
Cuts at: 0 578 904 981 1132 1852 3864
Size: 578 326 77 151 720 2012
Fragments arranged by size:
2012 720 578 326 151 77
StyI C'CwwG_G
Cuts at: 0 396 3210 3864
Size: 396 2814 654
Fragments arranged by size:
2814 654 396
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 0 640 696 1378 1845 2833 2876 2880 3337
Size: 640 56 682 467 988 43 4 457
Cuts at: 3337 3864
Size: 527
Fragments arranged by size:
988 682 640 527 467 457 56 43
4
TatI w'GTAC_w
Cuts at: 0 1055 1931 2591 3864
Size: 1055 876 660 1273
Fragments arranged by size:
1273 1055 876 660
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 0 3350 3382 3864
Size: 3350 32 482
Fragments arranged by size:
3350 482 32
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 0 882 918 1416 2580 3864
Size: 882 36 498 1164 1284
Fragments arranged by size:
1284 1164 882 498 36
XhoI C'TCGA_G
Cuts at: 0 175 1621 3758 3864
Size: 175 1446 2137 106
Fragments arranged by size:
2137 1446 175 106
XmaI C'CCGG_G
Cuts at: 0 102 155 169 3864
Size: 102 53 14 3695
Fragments arranged by size:
3695 102 53 14
ZraI GAC'GTC
Cuts at: 0 1794 3864
Size: 1794 2070
Enzymes that do cut:
AatII AccI Acc65I AcuI AfeI AflII AflIII AhdI
AleI AloI AlwNI ApaI ApaLI AvaI BaeI BamHI
BanI BanII BbeI BbvCI BcgI BclI BglI BglII
BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI
BsaI BsaAI BsaHI BsaWI BsaXI BseRI BseYI BsgI
BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI
BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstXI BstYI
Bsu36I BtgI BtgZI BtsI DraIII EaeI EagI EarI
EciI EcoICRI Eco57MI EcoNI EcoO109I FspI FspAI HaeII
Hin4I KasI KpnI MmeI MscI MslI MspA1I NaeI
NarI NdeI NgoMIV NheI NotI NspI PasI PciI
PflMI PfoI PpuMI PshAI PspOMI PspXI PstI PvuI
PvuII RsrII SacI SacII SanDI SapI SbfI SexAI
SfcI SfiI SfoI SmaI SmlI SrfI StuI StyI
TaqII TatI TstI XcmI XhoI XmaI ZraI
Enzymes that do not cut:
AarI AclI AgeI AlfI ApoI AscI AseI AsiSI
AvrII BbsI BciVI BfrBI BmgBI BsaBI BsiWI BsmI
BstBI BstEII BstZ17I ClaI CspCI DraI DrdI EcoRI
EcoRV FalI FseI HincII HindIII HpaI MfeI MluI
NcoI NruI NsiI PacI PmeI PmlI PpiI PsiI
PsrI SalI ScaI SgfI SgrAI SnaBI SpeI SphI
SspI SwaI Tth111I XbaI XmnI