Result of FASTA (ccds) for
pF1KSDF0390
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0390, 275 aa
1>>>pF1KSDF0390 275 - 275 aa - 275 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6158+/-0.00075; mu= 10.4957+/- 0.046
mean_var=117.7746+/-22.860, 0's: 0 Z-trim(112.9): 52 B-trim: 9 in 1/53
Lambda= 0.118181
statistics sampled from 13579 (13629) to 13579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.419), width: 16
Scan time: 2.480
The best scores are: opt bits E(32554)
CCDS12156.2 CAPS gene_id:828|Hs108|chr19 ( 275) 1879 330.5 7.7e-91
CCDS45934.2 CAPS gene_id:828|Hs108|chr19 ( 248) 1493 264.7 4.6e-71
CCDS3912.2 CAPSL gene_id:133690|Hs108|chr5 ( 208) 713 131.6 4.4e-31
CCDS73497.1 CAPS2 gene_id:84698|Hs108|chr12 ( 382) 365 72.5 5.1e-13
>>CCDS12156.2 CAPS gene_id:828|Hs108|chr19 (275 aa)
initn: 1879 init1: 1879 opt: 1879 Z-score: 1744.3 bits: 330.5 E(32554): 7.7e-91
Smith-Waterman score: 1879; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KSD MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
190 200 210 220 230 240
250 260 270
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
:::::::::::::::::::::::::::::::::::
CCDS12 GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
250 260 270
>>CCDS45934.2 CAPS gene_id:828|Hs108|chr19 (248 aa)
initn: 1562 init1: 1493 opt: 1493 Z-score: 1389.2 bits: 264.7 E(32554): 4.6e-71
Smith-Waterman score: 1631; 90.2% identity (90.2% similar) in 275 aa overlap (1-275:1-248)
10 20 30 40 50 60
pF1KSD MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
::::::::::::::::::::::::::::::::::::
CCDS45 EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKV------------------------
190 200 210
250 260 270
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
::::::::::::::::::::::::::::::::
CCDS45 ---TLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
220 230 240
>>CCDS3912.2 CAPSL gene_id:133690|Hs108|chr5 (208 aa)
initn: 709 init1: 572 opt: 713 Z-score: 671.6 bits: 131.6 E(32554): 4.4e-31
Smith-Waterman score: 713; 50.8% identity (81.5% similar) in 195 aa overlap (82-275:14-208)
60 70 80 90 100 110
pF1KSD LPLATVSPGTTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQG
. . .. .. .:.:: :::.::..::.:
CCDS39 MAGTARHDREMAIQAKKKLTTATDPIERLRLQCLARGSAGIKG
10 20 30 40
120 130 140 150 160 170
pF1KSD LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA
:.: :: .: :..:.:: :: .:: ..:... :.: . :..:..:.::.:..::: .
CCDS39 LGRVFRIMDDDNNRTLDFKEFMKGLNDYAVVMEKEEVEELFRRFDKDGNGTIDFNEFLLT
50 60 70 80 90 100
180 190 200 210 220 230
pF1KSD LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFL
::::::.::. :: :: :::..::::.:..::: ::... ::: ..:::.:..:.:.::
CCDS39 LRPPMSRARKEVIMQAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWSEEQVFRKFL
110 120 130 140 150 160
240 250 260 270
pF1KSD DNFDSS-EKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
::::: .::: :: ::..::.:::::..:: :. :: .::.:
CCDS39 DNFDSPYDKDGLVTPEEFMNYYAGVSASIDTDVYFIIMMRTAWKL
170 180 190 200
>>CCDS73497.1 CAPS2 gene_id:84698|Hs108|chr12 (382 aa)
initn: 364 init1: 261 opt: 365 Z-score: 347.2 bits: 72.5 E(32554): 5.1e-13
Smith-Waterman score: 365; 32.2% identity (65.6% similar) in 183 aa overlap (92-273:198-380)
70 80 90 100 110 120
pF1KSD TQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDR
: .. :. . .::. . ::...:.:::.
CCDS73 QIALDSLKTASMEQEDDIIIQETNDRLVFKAIQDVLKEKLHKRGVRILTGLGKYFQQLDK
170 180 190 200 210 220
130 140 150 160 170 180
pF1KSD DGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQARE
.:. :: .:.:.: . : ... . :.. . ::.: .: :: :.. :.. :.
CCDS73 EGNGLLDKADFKQALKVFHLEVSEKDFESAWLILNDNGNGKVDYGEFKRGIIGEMNEYRK
230 240 250 260 270 280
190 200 210 220 230 240
pF1KSD AVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD-SSEKD
. . :: ::: . .: : . ..: : .. : .: ::. ::.:. ::... . :.
CCDS73 SYVRKAFMKLDFNKSGSVPIINIRKCYCAKKHSQVISGHSTEEEIKSSFLETLKVACSKS
290 300 310 320 330 340
250 260 270
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
.:. .::.::: :.: .. ::.:: .. . :
CCDS73 DEVSYGEFEDYYEGLSIGIVDDEDFVNILRTPWGI
350 360 370 380
275 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:01:11 2016 done: Thu Nov 3 09:01:11 2016
Total Scan time: 2.480 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]