FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0166, 439 aa
  1>>>pF1KSDF0166 439 - 439 aa - 439 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1099+/-0.000791; mu= 13.6442+/- 0.048
 mean_var=78.1765+/-15.663, 0's: 0 Z-trim(109.4): 34  B-trim: 504 in 1/49
 Lambda= 0.145056
 statistics sampled from 10808 (10839) to 10808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.333), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS46963.1 TTC14 gene_id:151613|Hs108|chr3        ( 439) 2888 613.7 1.1e-175
CCDS75055.1 TTC14 gene_id:151613|Hs108|chr3        ( 653) 2831 601.9 6.2e-172
CCDS3237.1 TTC14 gene_id:151613|Hs108|chr3         ( 770) 2831 601.9 7.2e-172


>>CCDS46963.1 TTC14 gene_id:151613|Hs108|chr3             (439 aa)
 initn: 2888 init1: 2888 opt: 2888  Z-score: 3267.4  bits: 613.7 E(32554): 1.1e-175
Smith-Waterman score: 2888; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KSD MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
              370       380       390       400       410       420

              430         
pF1KSD ALQKLHKYMQVIPYFLLEI
       :::::::::::::::::::
CCDS46 ALQKLHKYMQVIPYFLLEI
              430         

>>CCDS75055.1 TTC14 gene_id:151613|Hs108|chr3             (653 aa)
 initn: 2831 init1: 2831 opt: 2831  Z-score: 3200.2  bits: 601.9 E(32554): 6.2e-172
Smith-Waterman score: 2831; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KSD MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
              370       380       390       400       410       420

              430                                                  
pF1KSD ALQKLHKYMQVIPYFLLEI                                         
       ::::::::::                                                  
CCDS75 ALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSTSSSS
              430       440       450       460       470       480

>>CCDS3237.1 TTC14 gene_id:151613|Hs108|chr3              (770 aa)
 initn: 2831 init1: 2831 opt: 2831  Z-score: 3199.1  bits: 601.9 E(32554): 7.2e-172
Smith-Waterman score: 2831; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KSD MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAED
              370       380       390       400       410       420

              430                                                  
pF1KSD ALQKLHKYMQVIPYFLLEI                                         
       ::::::::::                                                  
CCDS32 ALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSTSSSS
              430       440       450       460       470       480




439 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:53:26 2016 done: Thu Nov  3 08:53:27 2016
 Total Scan time:  3.340 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]