Result of FASTA (omim) for
pF1KSDF0106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0106, 366 aa
1>>>pF1KSDF0106 366 - 366 aa - 366 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5436+/-0.000338; mu= -7.0717+/- 0.021
mean_var=258.2186+/-53.309, 0's: 0 Z-trim(123.7): 96 B-trim: 1125 in 1/53
Lambda= 0.079814
statistics sampled from 44013 (44130) to 44013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.517), width: 16
Scan time: 10.790
The best scores are: opt bits E(85289)
NP_789847 (OMIM: 609722) PDZ and LIM domain protei ( 366) 2442 293.7 4.6e-79
NP_067643 (OMIM: 609722) PDZ and LIM domain protei ( 602) 2175 263.0 1.2e-69
NP_932159 (OMIM: 609722) PDZ and LIM domain protei ( 278) 1660 203.5 4.6e-52
NP_055291 (OMIM: 605889) PDZ and LIM domain protei ( 364) 423 61.2 4.4e-09
XP_011538632 (OMIM: 605900) PREDICTED: PDZ and LIM ( 226) 358 53.6 5.3e-07
NP_001124499 (OMIM: 166710,603422) PDZ and LIM dom ( 246) 351 52.8 9.9e-07
NP_003678 (OMIM: 166710,603422) PDZ and LIM domain ( 330) 350 52.7 1.4e-06
NP_001073584 (OMIM: 605906,609452) LIM domain-bind ( 330) 306 47.7 4.6e-05
XP_016871097 (OMIM: 605906,609452) PREDICTED: LIM ( 330) 306 47.7 4.6e-05
XP_005269525 (OMIM: 605906,609452) PREDICTED: LIM ( 330) 306 47.7 4.6e-05
NP_005442 (OMIM: 605903) PDZ and LIM domain protei ( 457) 309 48.1 4.7e-05
NP_001165082 (OMIM: 605906,609452) LIM domain-bind ( 398) 306 47.7 5.4e-05
XP_011537497 (OMIM: 605906,609452) PREDICTED: LIM ( 398) 306 47.7 5.4e-05
XP_016863146 (OMIM: 605904) PREDICTED: PDZ and LIM ( 602) 310 48.3 5.5e-05
NP_001244891 (OMIM: 605889) PDZ and LIM domain pro ( 276) 301 47.1 5.9e-05
XP_005262750 (OMIM: 605904) PREDICTED: PDZ and LIM ( 734) 310 48.3 6.5e-05
NP_006448 (OMIM: 605904) PDZ and LIM domain protei ( 596) 307 47.9 7e-05
XP_006714132 (OMIM: 605904) PREDICTED: PDZ and LIM ( 607) 307 47.9 7.1e-05
XP_005262752 (OMIM: 605904) PREDICTED: PDZ and LIM ( 728) 307 48.0 8.2e-05
XP_005269523 (OMIM: 605906,609452) PREDICTED: LIM ( 664) 306 47.8 8.3e-05
XP_006714129 (OMIM: 605904) PREDICTED: PDZ and LIM ( 739) 307 48.0 8.3e-05
XP_005269521 (OMIM: 605906,609452) PREDICTED: LIM ( 727) 306 47.9 8.9e-05
NP_009009 (OMIM: 605906,609452) LIM domain-binding ( 727) 306 47.9 8.9e-05
NP_001165081 (OMIM: 605906,609452) LIM domain-bind ( 732) 306 47.9 9e-05
XP_011537490 (OMIM: 605906,609452) PREDICTED: LIM ( 743) 306 47.9 9.1e-05
XP_016871095 (OMIM: 605906,609452) PREDICTED: LIM ( 743) 306 47.9 9.1e-05
XP_011537489 (OMIM: 605906,609452) PREDICTED: LIM ( 748) 306 47.9 9.1e-05
XP_011537488 (OMIM: 605906,609452) PREDICTED: LIM ( 795) 306 47.9 9.6e-05
XP_011537487 (OMIM: 605906,609452) PREDICTED: LIM ( 811) 306 47.9 9.8e-05
XP_011537486 (OMIM: 605906,609452) PREDICTED: LIM ( 811) 306 47.9 9.8e-05
XP_011537492 (OMIM: 605906,609452) PREDICTED: LIM ( 680) 297 46.8 0.00017
XP_011537491 (OMIM: 605906,609452) PREDICTED: LIM ( 696) 297 46.8 0.00018
XP_006714133 (OMIM: 605904) PREDICTED: PDZ and LIM ( 605) 295 46.5 0.00018
XP_011529845 (OMIM: 605904) PREDICTED: PDZ and LIM ( 600) 294 46.4 0.0002
NP_001011516 (OMIM: 605904) PDZ and LIM domain pro ( 214) 280 44.6 0.00025
NP_001011515 (OMIM: 605904) PDZ and LIM domain pro ( 234) 280 44.6 0.00027
NP_001107579 (OMIM: 605889) PDZ and LIM domain pro ( 316) 283 45.0 0.00028
XP_016871098 (OMIM: 605906,609452) PREDICTED: LIM ( 283) 279 44.5 0.00035
NP_001073585 (OMIM: 605906,609452) LIM domain-bind ( 283) 279 44.5 0.00035
NP_001243356 (OMIM: 605904) PDZ and LIM domain pro ( 483) 280 44.8 0.0005
NP_001011513 (OMIM: 605904) PDZ and LIM domain pro ( 487) 280 44.8 0.00051
XP_005262755 (OMIM: 605904) PREDICTED: PDZ and LIM ( 493) 280 44.8 0.00051
XP_016863147 (OMIM: 605904) PREDICTED: PDZ and LIM ( 498) 280 44.8 0.00052
XP_005262753 (OMIM: 605904) PREDICTED: PDZ and LIM ( 619) 280 44.8 0.00062
NP_001243355 (OMIM: 605904) PDZ and LIM domain pro ( 625) 280 44.8 0.00063
XP_006714131 (OMIM: 605904) PREDICTED: PDZ and LIM ( 630) 280 44.8 0.00063
NP_001073583 (OMIM: 605906,609452) LIM domain-bind ( 617) 279 44.7 0.00067
NP_001244892 (OMIM: 605889) PDZ and LIM domain pro ( 197) 266 43.0 0.00072
NP_066272 (OMIM: 605900) PDZ and LIM domain protei ( 329) 265 43.0 0.0012
NP_998801 (OMIM: 605903) PDZ and LIM domain protei ( 222) 260 42.3 0.0013
>>NP_789847 (OMIM: 609722) PDZ and LIM domain protein 2 (366 aa)
initn: 2442 init1: 2442 opt: 2442 Z-score: 1540.5 bits: 293.7 E(85289): 4.6e-79
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
310 320 330 340 350 360
pF1KSD PIQPSW
::::::
NP_789 PIQPSW
>>NP_067643 (OMIM: 609722) PDZ and LIM domain protein 2 (602 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 1371.1 bits: 263.0 E(85289): 1.2e-69
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:251-577)
10 20 30
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVT
::::::::::::::::::::::::::::::
NP_067 GGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT
230 240 250 260 270 280
40 50 60 70 80 90
pF1KSD KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
290 300 310 320 330 340
100 110 120 130 140 150
pF1KSD TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
350 360 370 380 390 400
160 170 180 190 200 210
pF1KSD ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
410 420 430 440 450 460
220 230 240 250 260 270
pF1KSD GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
470 480 490 500 510 520
280 290 300 310 320 330
pF1KSD LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGD
530 540 550 560 570 580
340 350 360
pF1KSD CAMEGMRLSLEALEGMVEGAKRRDRRKTRRPIQPSW
NP_067 ELYCEKHARQRYSAPATLSSRA
590 600
>>NP_932159 (OMIM: 609722) PDZ and LIM domain protein 2 (278 aa)
initn: 1658 init1: 1658 opt: 1660 Z-score: 1055.6 bits: 203.5 E(85289): 4.6e-52
Smith-Waterman score: 1660; 93.2% identity (95.0% similar) in 279 aa overlap (1-279:1-276)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
::::::::::::::: : .: .. ::. . :
NP_932 SFRLLQEALEAEERGTR---LCASRRAGTATPAATPVPTVG
250 260 270
310 320 330 340 350 360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
>>NP_055291 (OMIM: 605889) PDZ and LIM domain protein 3 (364 aa)
initn: 498 init1: 283 opt: 423 Z-score: 284.1 bits: 61.2 E(85289): 4.4e-09
Smith-Waterman score: 519; 31.3% identity (61.2% similar) in 345 aa overlap (1-327:1-334)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
: :: . ::::::::..:: ::. :...:... .:: :.: :::.:.::.: ..:.:
NP_055 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQAT--SPGQTNGDSSLEVLATRFQGSVR--TYTESQS
::.::..:. . : :..::... :: :.. :.. . . ... . .: : .
NP_055 THADAQDRIKAAAHQLCLKIDRGETHLWSP-QVSEDGKAHPFKINLESEPQDGNYFEHKH
70 80 90 100 110
120 130 140 150 160 170
pF1KSD SLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR-SFQSLACSPGLPAADRLSYS--
..: .: . :. : : : . . .:... : : : : : .: .:. .
NP_055 NIR---PKPFVIPGRS-SGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIP
120 130 140 150 160 170
180 190 200 210 220
pF1KSD ---GRPGSR----QAGLGRAGDSAVLVLPPSPGPRSS----RPSMDSEGGSLLLDEDSEV
:: . : . : .. : :. : :. .:. .:.:
NP_055 LEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASV--PPESDV
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD FKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPK
..::..::. . ::::.:::.:: .. . :: : .: ... .. . : .
NP_055 YRMLHDNRNEPTQPRQSGSFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGSGGA--QR
240 250 260 270 280 290
290 300 310 320 330 340
pF1KSD LHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEA
. :.::...:.. .:. .. .:::: :..::::.::::..:.:.
NP_055 MPLCDKCGSGIVGAVVKARD-KYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARART
300 310 320 330 340
350 360
pF1KSD LEGMVEGAKRRDRRKTRRPIQPSW
NP_055 KPPEGYDTVTLYPKA
350 360
>>XP_011538632 (OMIM: 605900) PREDICTED: PDZ and LIM dom (226 aa)
initn: 341 init1: 194 opt: 358 Z-score: 246.8 bits: 53.6 E(85289): 5.3e-07
Smith-Waterman score: 375; 36.9% identity (67.0% similar) in 203 aa overlap (131-329:19-200)
110 120 130 140 150 160
pF1KSD ATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLAC
:.. ::. :.:: : .:. .... :
XP_011 MNLASEPQEVLHIGSAHNRSAMPFTASPASS--TTARVITNQYNNPA-
10 20 30 40
170 180 190 200 210
pF1KSD SPGLPAADRLS-YSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED
:: ... .: ... :. :. : ..: : ... :: ::..:..
XP_011 --GLYSSENISNFNNALESKTAASGVEANS-------RPLDHAQPPS------SLVIDKE
50 60 70 80 90
220 230 240 250 260 270
pF1KSD SEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERG--GTPAFLPSSLSPQSSLPASRAL
:::.:::::..: :.::.:: .::: ::.::.: . :. . : .: ... :: .
XP_011 SEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAAS--I
100 110 120 130 140
280 290 300 310 320 330
pF1KSD ATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFW-EDACAMEGM
.. :: :.::.:.:.. :.... :.::: ::.:.::: :::..:::. ::
XP_011 GNAQKLPMCDKCGTGIVGVFVKLRD-RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKH
150 160 170 180 190 200
340 350 360
pF1KSD RLSLEALEGMVEGAKRRDRRKTRRPIQPSW
XP_011 ARERVTPPEGYEVVTVFPK
210 220
>>NP_001124499 (OMIM: 166710,603422) PDZ and LIM domain (246 aa)
initn: 451 init1: 275 opt: 351 Z-score: 241.8 bits: 52.8 E(85289): 9.9e-07
Smith-Waterman score: 405; 33.5% identity (56.7% similar) in 284 aa overlap (1-279:1-244)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
: .: . ::.:::::..::::: .:. ...: .:: : : :::.: ::::::.: :
NP_001 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
: :::..:. . : :...: .. : .. ::. .. ... .. . . : :
NP_001 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
70 80 90 100 110 120
130 140 150 160 170
pF1KSD -SYSSPTSLSPRAGSPFSPPPS---SSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRP
. ..: . : :::.. :: . ..::.. ....: :: :.:: :
NP_001 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP-PSAD-------P
130 140 150 160 170
180 190 200 210 220 230
pF1KSD GSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-
. :: :. : : : :::..::.: : ::
NP_001 AR---GLPRSRDCRV-------------------------DLGSEVYRMLREPAEPVAAE
180 190 200
240 250 260 270 280 290
pF1KSD PRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIAN
:.::.::: :: ::: : ::.:. : . .:..:.. .:
NP_001 PKQSGSFRYLQGMLEAGE-GGAPS---SRHGTSSTIPSASCAVTAA
210 220 230 240
300 310 320 330 340 350
pF1KSD QAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDR
>>NP_003678 (OMIM: 166710,603422) PDZ and LIM domain pro (330 aa)
initn: 517 init1: 275 opt: 350 Z-score: 239.3 bits: 52.7 E(85289): 1.4e-06
Smith-Waterman score: 548; 34.3% identity (57.7% similar) in 338 aa overlap (1-329:1-297)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
: .: . ::.:::::..::::: .:. ...: .:: : : :::.: ::::::.: :
NP_003 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
: :::..:. . : :...: .. : .. ::. .. ... .. . . : :
NP_003 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
70 80 90 100 110 120
130 140 150 160 170
pF1KSD -SYSSPTSLSPRAGSPFSPPPS---SSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRP
. ..: . : :::.. :: . ..::.. ....: :: :.:: :
NP_003 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP-PSAD-------P
130 140 150 160 170
180 190 200 210 220 230
pF1KSD GSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-
. :: :. : : : :::..::.: : ::
NP_003 AR---GLPRSRDCRV-------------------------DLGSEVYRMLREPAEPVAAE
180 190 200
240 250 260 270 280 290
pF1KSD PRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATP----PKLHTCEKCST
:.::.::: :: ::: : : :. :.. :.. :.. :..: : : .:.
NP_003 PKQSGSFRYLQGMLEAGEGGDWPG--PGG--PRNLKPTASKLGAPLSGLQGLPECTRCGH
210 220 230 240 250 260
300 310 320 330 340 350
pF1KSD SIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAK
.:.. :. .. : :: :. :.:::::::.::.:. :
NP_003 GIVGTIVKARDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVV
270 280 290 300 310
360
pF1KSD RRDRRKTRRPIQPSW
NP_003 AVYPNAKVELV
320 330
>>NP_001073584 (OMIM: 605906,609452) LIM domain-binding (330 aa)
initn: 291 init1: 266 opt: 306 Z-score: 211.9 bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
:. .: ..::.:::::. ::.::. :. ..... .:: ...: ::..:::.: ... :
NP_001 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
10 20 30 40 50 60
70 80 90 100 110
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
: :::.::... : : :..:. : .:.. .. : :. . . .. ....:
NP_001 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
70 80 90 100 110
120 130 140 150 160 170
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
: . :: . :: :: .: : :.:: .:.::: .:: : :. . .
NP_001 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
. :.:. .: :. : ::.: . .. .: : :. .: : . .:
NP_001 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
180 190 200 210 220
240 250 260 270 280 290
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
.:.
NP_001 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
230 240 250 260 270 280
>>XP_016871097 (OMIM: 605906,609452) PREDICTED: LIM doma (330 aa)
initn: 291 init1: 266 opt: 306 Z-score: 211.9 bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
:. .: ..::.:::::. ::.::. :. ..... .:: ...: ::..:::.: ... :
XP_016 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
10 20 30 40 50 60
70 80 90 100 110
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
: :::.::... : : :..:. : .:.. .. : :. . . .. ....:
XP_016 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
70 80 90 100 110
120 130 140 150 160 170
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
: . :: . :: :: .: : :.:: .:.::: .:: : :. . .
XP_016 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
. :.:. .: :. : ::.: . .. .: : :. .: : . .:
XP_016 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
180 190 200 210 220
240 250 260 270 280 290
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
.:.
XP_016 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
230 240 250 260 270 280
>>XP_005269525 (OMIM: 605906,609452) PREDICTED: LIM doma (330 aa)
initn: 291 init1: 266 opt: 306 Z-score: 211.9 bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
:. .: ..::.:::::. ::.::. :. ..... .:: ...: ::..:::.: ... :
XP_005 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
10 20 30 40 50 60
70 80 90 100 110
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
: :::.::... : : :..:. : .:.. .. : :. . . .. ....:
XP_005 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
70 80 90 100 110
120 130 140 150 160 170
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
: . :: . :: :: .: : :.:: .:.::: .:: : :. . .
XP_005 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
. :.:. .: :. : ::.: . .. .: : :. .: : . .:
XP_005 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
180 190 200 210 220
240 250 260 270 280 290
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
.:.
XP_005 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
230 240 250 260 270 280
366 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:51:44 2016 done: Thu Nov 3 08:51:45 2016
Total Scan time: 10.790 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]