Result of FASTA (ccds) for
pF1KSDF0106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0106, 366 aa
1>>>pF1KSDF0106 366 - 366 aa - 366 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0953+/-0.000818; mu= -4.4872+/- 0.049
mean_var=226.7463+/-45.291, 0's: 0 Z-trim(115.8): 44 B-trim: 0 in 0/51
Lambda= 0.085173
statistics sampled from 16353 (16396) to 16353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.504), width: 16
Scan time: 3.590
The best scores are: opt bits E(32554)
CCDS34860.1 PDLIM2 gene_id:64236|Hs108|chr8 ( 366) 2442 312.2 4.7e-85
CCDS6032.2 PDLIM2 gene_id:64236|Hs108|chr8 ( 602) 2175 279.4 5.4e-75
CCDS34861.1 PDLIM2 gene_id:64236|Hs108|chr8 ( 278) 1660 216.0 3.1e-56
>>CCDS34860.1 PDLIM2 gene_id:64236|Hs108|chr8 (366 aa)
initn: 2442 init1: 2442 opt: 2442 Z-score: 1640.5 bits: 312.2 E(32554): 4.7e-85
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
310 320 330 340 350 360
pF1KSD PIQPSW
::::::
CCDS34 PIQPSW
>>CCDS6032.2 PDLIM2 gene_id:64236|Hs108|chr8 (602 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 1459.8 bits: 279.4 E(32554): 5.4e-75
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:251-577)
10 20 30
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVT
::::::::::::::::::::::::::::::
CCDS60 GGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT
230 240 250 260 270 280
40 50 60 70 80 90
pF1KSD KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
290 300 310 320 330 340
100 110 120 130 140 150
pF1KSD TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
350 360 370 380 390 400
160 170 180 190 200 210
pF1KSD ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
410 420 430 440 450 460
220 230 240 250 260 270
pF1KSD GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
470 480 490 500 510 520
280 290 300 310 320 330
pF1KSD LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGD
530 540 550 560 570 580
340 350 360
pF1KSD CAMEGMRLSLEALEGMVEGAKRRDRRKTRRPIQPSW
CCDS60 ELYCEKHARQRYSAPATLSSRA
590 600
>>CCDS34861.1 PDLIM2 gene_id:64236|Hs108|chr8 (278 aa)
initn: 1658 init1: 1658 opt: 1660 Z-score: 1123.0 bits: 216.0 E(32554): 3.1e-56
Smith-Waterman score: 1660; 93.2% identity (95.0% similar) in 279 aa overlap (1-279:1-276)
10 20 30 40 50 60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
::::::::::::::: : .: .. ::. . :
CCDS34 SFRLLQEALEAEERGTR---LCASRRAGTATPAATPVPTVG
250 260 270
310 320 330 340 350 360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
366 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:51:43 2016 done: Thu Nov 3 08:51:43 2016
Total Scan time: 3.590 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]