Result of FASTA (omim) for
pF1KSDA1399
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1399, 410 aa
1>>>pF1KSDA1399 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4725+/-0.000334; mu= 0.2724+/- 0.021
mean_var=280.0599+/-57.827, 0's: 0 Z-trim(124.8): 34 B-trim: 480 in 1/58
Lambda= 0.076639
statistics sampled from 47100 (47136) to 47100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.553), width: 16
Scan time: 7.630
The best scores are: opt bits E(85289)
NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 3001 344.5 2.8e-94
NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 1194 144.7 3.4e-34
NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 975 120.5 7.4e-27
NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 279 43.4 0.00086
XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 279 43.4 0.00086
XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 273 42.8 0.0013
XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 273 42.8 0.0013
NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 268 42.2 0.0019
XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 266 42.2 0.0037
XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 259 41.2 0.004
XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 259 41.2 0.004
NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 259 41.2 0.004
NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 259 41.2 0.004
XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 260 41.6 0.006
XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 260 41.6 0.006
XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 260 41.6 0.006
NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 260 41.6 0.006
XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 260 41.6 0.006
XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 260 41.6 0.006
>>NP_065865 (OMIM: 608208) E3 ubiquitin-protein ligase M (410 aa)
initn: 3001 init1: 3001 opt: 3001 Z-score: 1813.7 bits: 344.5 E(85289): 2.8e-94
Smith-Waterman score: 3001; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)
10 20 30 40 50 60
pF1KSD MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG
310 320 330 340 350 360
370 380 390 400 410
pF1KSD PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
370 380 390 400 410
>>NP_612405 (OMIM: 613336) E3 ubiquitin-protein ligase M (346 aa)
initn: 1393 init1: 1174 opt: 1194 Z-score: 734.8 bits: 144.7 E(85289): 3.4e-34
Smith-Waterman score: 1367; 58.3% identity (70.7% similar) in 386 aa overlap (37-410:1-346)
10 20 30 40 50 60
pF1KSD GLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLR---RPPQAPLP
.:: : ::..:.::...: :: : :
NP_612 MLKSRLRMFLNELKLLVLTGGGRPRAEPQP
10 20 30
70 80 90 100 110
pF1KSD MHGDPQPPGLAA-NNTLPALGAGGWAGWRG--PRE--VVG-REPPPVPPPPPLPPSSVED
: : : . : : . : :: ..: .:: : ::: ::
NP_612 RGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPP-----
40 50 60 70 80
120 130 140 150 160 170
pF1KSD DWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLS
::..: : ::.::::::.::: :::::::::::::::
NP_612 ------LPPPGAL---------------DALSLSSSLDSGLRTPQCRICFQGPEQGELLS
90 100 110 120
180 190 200 210 220 230
pF1KSD PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ
::::::::.::::::::.:::::: :::::::.::.:.::::::::::::::::::::::
NP_612 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQ
130 140 150 160 170 180
240 250 260 270 280 290
pF1KSD VAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPS
.:: .::::::.:::::::::..::::.:::::::::::::::::::::::::::::: :
NP_612 IAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSS
190 200 210 220 230 240
300 310 320 330 340 350
pF1KSD VYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGG---RTNPRTSSSTQANIPSSEEETAGT
:::::::::::::::::::::::::. . .:: ...::.: . :.: ..:
NP_612 VYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTG----PTS----GAT
250 260 270 280 290
360 370 380 390 400 410
pF1KSD PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
: :: . : ..:.:::::.:..::: . :: :.::.:::::::
NP_612 SRP---PAAQRMRTLLP---QRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
300 310 320 330 340
>>NP_001096032 (OMIM: 613338) E3 ubiquitin-protein ligas (402 aa)
initn: 1124 init1: 958 opt: 975 Z-score: 603.1 bits: 120.5 E(85289): 7.4e-27
Smith-Waterman score: 1122; 47.2% identity (66.8% similar) in 392 aa overlap (57-410:28-402)
30 40 50 60 70 80
pF1KSD PAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQAPLPMHGDPQP-PGLAANNTLPALGAG
:: : : :.: : : :: :: : :.
NP_001 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVP--AAPRYLPPLPAS
10 20 30 40 50
90 100 110 120 130
pF1KSD GWAGWR--GPREVVGREPP------PVPPPP-PLPPSSVE-----DDWGGPATEPPASLL
. : :: : .:. : .:::: :: :.. : :. :: : :.
NP_001 PETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAA
60 70 80 90 100 110
140 150 160
pF1KSD SSASSDDFCKEKTE-DRYSLGS-----------SLDSG-----------MRTPLCRICFQ
... ... : .: . :. : .:: . :.:.::::
NP_001 KGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQ
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAI
: ::::::.::::::::. ::: ::.::::::: :.:::: :.::::::. :.: :::.:
NP_001 GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD SLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCI
:.:..::::. :.::::::::::..::.::.::: : :::.:.:::::::::::::.:::
NP_001 SITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KSD GLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSE
:::.::: .:::.::::.::: .: ::::::. :.:... : ..:.: .: .
NP_001 GLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRG-----ESSTSRTLWLPLTA
300 310 320 330 340 350
350 360 370 380 390 400
pF1KSD EETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVT
.. . : : ..: . .:.:..::.....::::. : .:: :.:::::
NP_001 LRNRNLVHPTQL--------TSP--RFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVT
360 370 380 390 400
410
pF1KSD TV
.:
NP_001 SV
>>NP_001159845 (OMIM: 613331) E3 ubiquitin-protein ligas (289 aa)
initn: 169 init1: 169 opt: 279 Z-score: 189.1 bits: 43.4 E(85289): 0.00086
Smith-Waterman score: 279; 25.4% identity (52.6% similar) in 291 aa overlap (89-363:3-285)
60 70 80 90 100 110
pF1KSD QAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE-D
:: :...:.: .: : : .
NP_001 MLGWC---EAIARNPHRIPNNTRTPEISGDLA
10 20
120 130 140 150 160 170
pF1KSD DWGGPATEPPASLLSSAS-SDDFCKEKTEDRYSLGSSLDSGMRTP----LCRICF-QGPE
: . .: : ::: :... : .. . : . : .:::: .: :
NP_001 DASQTSTLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDE
30 40 50 60 70 80
180 190 200 210 220 230
pF1KSD QGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPL-QWQAISL
.. :..:::: :... .:: :: .::. :::: :: : . .:: .:. ...
NP_001 ESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC--KYDFIMETKLKPLRKWEKLQM
90 100 110 120 130 140
240 250 260 270 280
pF1KSD TVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGMYGFMDVVCIG
:. :. .. .. .. :. . : .. .. .:. .: . . .. . :: ::
NP_001 TTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIG
150 160 170 180 190 200
290 300 310 320 330 340
pF1KSD L-----IIHEGPSVY-RIFKRWQAVNQQWKVLNY-DKTKDLEDQKAGGRTNPRTSSSTQA
. ... .:: ....: .: :. : : : .: :: . . : :. . .
NP_001 FTGGLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTAKKLEKNFS---CNVNTDIKDAV
210 220 230 240 250 260
350 360 370 380 390 400
pF1KSD NIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRE
.: . . . :. : :: .
NP_001 VVPVPQTGANSLPSAEGGPPEVVSV
270 280
>>XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquitin-pr (289 aa)
initn: 169 init1: 169 opt: 279 Z-score: 189.1 bits: 43.4 E(85289): 0.00086
Smith-Waterman score: 279; 25.4% identity (52.6% similar) in 291 aa overlap (89-363:3-285)
60 70 80 90 100 110
pF1KSD QAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE-D
:: :...:.: .: : : .
XP_016 MLGWC---EAIARNPHRIPNNTRTPEISGDLA
10 20
120 130 140 150 160 170
pF1KSD DWGGPATEPPASLLSSAS-SDDFCKEKTEDRYSLGSSLDSGMRTP----LCRICF-QGPE
: . .: : ::: :... : .. . : . : .:::: .: :
XP_016 DASQTSTLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDE
30 40 50 60 70 80
180 190 200 210 220 230
pF1KSD QGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPL-QWQAISL
.. :..:::: :... .:: :: .::. :::: :: : . .:: .:. ...
XP_016 ESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC--KYDFIMETKLKPLRKWEKLQM
90 100 110 120 130 140
240 250 260 270 280
pF1KSD TVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGMYGFMDVVCIG
:. :. .. .. .. :. . : .. .. .:. .: . . .. . :: ::
XP_016 TTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIG
150 160 170 180 190 200
290 300 310 320 330 340
pF1KSD L-----IIHEGPSVY-RIFKRWQAVNQQWKVLNY-DKTKDLEDQKAGGRTNPRTSSSTQA
. ... .:: ....: .: :. : : : .: :: . . : :. . .
XP_016 FTGGLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTAKKLEKNFS---CNVNTDIKDAV
210 220 230 240 250 260
350 360 370 380 390 400
pF1KSD NIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRE
.: . . . :. : :: .
XP_016 VVPVPQTGANSLPSAEGGPPEVVSV
270 280
>>XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquitin-pr (285 aa)
initn: 169 init1: 169 opt: 273 Z-score: 185.6 bits: 42.8 E(85289): 0.0013
Smith-Waterman score: 273; 25.4% identity (55.4% similar) in 260 aa overlap (115-363:32-281)
90 100 110 120 130 140
pF1KSD GGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDF-CKEK
::.. . . .: .:.::: .
XP_016 PLHQISVIPARETASNGRNSMGRNKEKNKEVENEKSPGRSASRSSNISKASSPTTGTAPR
10 20 30 40 50 60
150 160 170 180 190 200
pF1KSD TEDRYSLGSSLDSGMRTPLCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGC
...: :. : .. .:::: .: :.. :..:::: :... .:: :: .::.
XP_016 SQSRLSVCPSTQD-----ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDT
70 80 90 100 110
210 220 230 240 250 260
pF1KSD WSCELCYYKYHVIAISTKNPL-QWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFS
:::: :: : . .:: .:. ...:. :. .. .. .. :. . : .. ..
XP_016 RCCELC--KYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLID
120 130 140 150 160 170
270 280 290 300 310
pF1KSD PSARWQRQDLLFQIC-YGMYGFMDVVCIGL-----IIHEGPSVY-RIFKRWQAVNQQWKV
.:. .: . . .. . :: ::. ... .:: ....: .: :. :
XP_016 RTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYNRVIFV
180 190 200 210 220 230
320 330 340 350 360 370
pF1KSD LNY-DKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLS
: : .: :: . . : :. . . .: . . . :. : :: .
XP_016 QNCPDTAKKLEKNFS---CNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVSV
240 250 260 270 280
380 390 400 410
pF1KSD HHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
>>XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquitin-pr (285 aa)
initn: 169 init1: 169 opt: 273 Z-score: 185.6 bits: 42.8 E(85289): 0.0013
Smith-Waterman score: 273; 25.4% identity (55.4% similar) in 260 aa overlap (115-363:32-281)
90 100 110 120 130 140
pF1KSD GGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDF-CKEK
::.. . . .: .:.::: .
XP_016 PLHQISVIPARETASNGRNSMGRNKEKNKEVENEKSPGRSASRSSNISKASSPTTGTAPR
10 20 30 40 50 60
150 160 170 180 190 200
pF1KSD TEDRYSLGSSLDSGMRTPLCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGC
...: :. : .. .:::: .: :.. :..:::: :... .:: :: .::.
XP_016 SQSRLSVCPSTQD-----ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDT
70 80 90 100 110
210 220 230 240 250 260
pF1KSD WSCELCYYKYHVIAISTKNPL-QWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFS
:::: :: : . .:: .:. ...:. :. .. .. .. :. . : .. ..
XP_016 RCCELC--KYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLID
120 130 140 150 160 170
270 280 290 300 310
pF1KSD PSARWQRQDLLFQIC-YGMYGFMDVVCIGL-----IIHEGPSVY-RIFKRWQAVNQQWKV
.:. .: . . .. . :: ::. ... .:: ....: .: :. :
XP_016 RTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYNRVIFV
180 190 200 210 220 230
320 330 340 350 360 370
pF1KSD LNY-DKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLS
: : .: :: . . : :. . . .: . . . :. : :: .
XP_016 QNCPDTAKKLEKNFS---CNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVSV
240 250 260 270 280
380 390 400 410
pF1KSD HHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
>>NP_060393 (OMIM: 613331) E3 ubiquitin-protein ligase M (272 aa)
initn: 195 init1: 169 opt: 268 Z-score: 182.9 bits: 42.2 E(85289): 0.0019
Smith-Waterman score: 268; 25.0% identity (55.7% similar) in 244 aa overlap (130-363:35-268)
100 110 120 130 140 150
pF1KSD EPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMR
.:...: ....: :. : ..
NP_060 HVCCNFLNMWKKSKISTMYYLNQDAKLSNLFLQASSPTTGTAPRSQSRLSVCPSTQD---
10 20 30 40 50 60
160 170 180 190 200 210
pF1KSD TPLCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS
.:::: .: :.. :..:::: :... .:: :: .::. :::: :: : .
NP_060 --ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC--KYDFIMET
70 80 90 100 110
220 230 240 250 260 270
pF1KSD TKNPL-QWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-
.:: .:. ...:. :. .. .. .. :. . : .. .. .:. .: .
NP_060 KLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLE
120 130 140 150 160 170
280 290 300 310 320
pF1KSD YGMYGFMDVVCIGL-----IIHEGPSVY-RIFKRWQAVNQQWKVLNY-DKTKDLEDQKAG
. .. . :: ::. ... .:: ....: .: :. : : : .: :: . .
NP_060 WPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTAKKLEKNFS-
180 190 200 210 220 230
330 340 350 360 370 380
pF1KSD GRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLR
: :. . . .: . . . :. : :: .
NP_060 --CNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVSV
240 250 260 270
390 400 410
pF1KSD PHEQRSPPGSSRELVMRVTTV
>>XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquitin-pr (545 aa)
initn: 194 init1: 169 opt: 266 Z-score: 177.7 bits: 42.2 E(85289): 0.0037
Smith-Waterman score: 266; 26.0% identity (56.2% similar) in 219 aa overlap (155-363:328-541)
130 140 150 160 170 180
pF1KSD EPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICF-QGPEQGELLSPCRCDG
:.. .:::: .: :.. :..:::: :
XP_011 ILGVPEGSKDMNDAGLQVNNPVQKPPATYDDGSDNLEVCRICHCEGDEESPLITPCRCTG
300 310 320 330 340 350
190 200 210 220 230 240
pF1KSD SVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPL-QWQAISLTVIEKVQVAAAI
... .:: :: .::. :::: :: : . .:: .:. ...:. :. .. ..
XP_011 TLRFVHQSCLHQWIKSSDTRCCELC--KYDFIMETKLKPLRKWEKLQMTTSERRKIFCSV
360 370 380 390 400 410
250 260 270 280 290
pF1KSD LGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGMYGFMDVVCIGL-----IIHEGP
.. :. . : .. .. .:. .: . . .. . :: ::. ...
XP_011 TFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQC
420 430 440 450 460 470
300 310 320 330 340 350
pF1KSD SVY-RIFKRWQAVNQQWKVLNY-DKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGT
.:: ....: .: :. : : : .: :: . . : :. . . .: . . .
XP_011 KVYVQLWRRLKAYNRVIFVQNCPDTAKKLEKNFS---CNVNTDIKDAVVVPVPQTGANSL
480 490 500 510 520 530
360 370 380 390 400 410
pF1KSD PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
:. : :: .
XP_011 PSAEGGPPEVVSV
540
>>XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (291 aa)
initn: 161 init1: 161 opt: 259 Z-score: 177.1 bits: 41.2 E(85289): 0.004
Smith-Waterman score: 259; 26.1% identity (56.9% similar) in 211 aa overlap (162-363:79-287)
140 150 160 170 180 190
pF1KSD SSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICF-QGPEQGELLSPCRCDGSVKCTHQ
.:::: .: ... :..::.: ::.. .::
XP_011 ISKAGSPPSASAPAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQ
50 60 70 80 90 100
200 210 220 230 240
pF1KSD PCLIKWISERGCWSCELCYYKYHVIAISTKNPL-QWQAISLTVIEKVQVAAAILGSLFLI
:: .::. :::: ::. : . .:: .:. ...: :. .. .. .. :
XP_011 ACLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI
110 120 130 140 150 160
250 260 270 280 290 300
pF1KSD ASISWLIWSTFSPSARWQRQDLLFQIC-YGMYGFMDVVCIG-----LIIHEGPSVY-RIF
. . : .. .. .:. .: : . .. . :: :: :... .:: ...
XP_011 TCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLW
170 180 190 200 210 220
310 320 330 340 350 360
pF1KSD KRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPA
:: .: :. : : .:. . . . :.: .. .: :. ... ::. :
XP_011 KRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGA
230 240 250 260 270 280
370 380 390 400 410
pF1KSD QAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
.
XP_011 EIIHV
290
410 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:08:38 2016 done: Thu Nov 3 06:08:39 2016
Total Scan time: 7.630 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]