FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1399, 410 aa
  1>>>pF1KSDA1399 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6880+/-0.00082; mu= 5.1109+/- 0.050
 mean_var=261.5199+/-52.392, 0's: 0 Z-trim(117.1): 12  B-trim: 0 in 0/53
 Lambda= 0.079309
 statistics sampled from 17804 (17816) to 17804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.547), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2        ( 410) 3001 355.9 4.1e-98
CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12       ( 346) 1194 149.0 6.3e-36
CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5      ( 402)  975 124.0 2.4e-28


>>CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2             (410 aa)
 initn: 3001 init1: 3001 opt: 3001  Z-score: 1874.9  bits: 355.9 E(32554): 4.1e-98
Smith-Waterman score: 3001; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KSD MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG
              310       320       330       340       350       360

              370       380       390       400       410
pF1KSD PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
              370       380       390       400       410

>>CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12            (346 aa)
 initn: 1393 init1: 1174 opt: 1194  Z-score: 758.5  bits: 149.0 E(32554): 6.3e-36
Smith-Waterman score: 1367; 58.3% identity (70.7% similar) in 386 aa overlap (37-410:1-346)

         10        20        30        40        50           60   
pF1KSD GLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLR---RPPQAPLP
                                     .:: : ::..:.::...:    ::   : :
CCDS31                               MLKSRLRMFLNELKLLVLTGGGRPRAEPQP
                                             10        20        30

            70         80        90            100       110       
pF1KSD MHGDPQPPGLAA-NNTLPALGAGGWAGWRG--PRE--VVG-REPPPVPPPPPLPPSSVED
         :     : :   .     : :    . :  ::   ..: .::   : ::: ::     
CCDS31 RGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPP-----
               40        50        60        70        80          

       120       130       140       150       160       170       
pF1KSD DWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLS
               ::..:               :  ::.::::::.::: :::::::::::::::
CCDS31 ------LPPPGAL---------------DALSLSSSLDSGLRTPQCRICFQGPEQGELLS
                90                      100       110       120    

       180       190       200       210       220       230       
pF1KSD PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ
       ::::::::.::::::::.:::::: :::::::.::.:.::::::::::::::::::::::
CCDS31 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQ
          130       140       150       160       170       180    

       240       250       260       270       280       290       
pF1KSD VAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPS
       .:: .::::::.:::::::::..::::.:::::::::::::::::::::::::::::: :
CCDS31 IAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSS
          190       200       210       220       230       240    

       300       310       320       330          340       350    
pF1KSD VYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGG---RTNPRTSSSTQANIPSSEEETAGT
       :::::::::::::::::::::::::.  . .::   ...::.: .     :.:    ..:
CCDS31 VYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTG----PTS----GAT
          250       260       270       280       290              

          360       370       380       390       400       410
pF1KSD PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
         :   ::    .   :   ..:.:::::.:..::: . ::   :.::.:::::::
CCDS31 SRP---PAAQRMRTLLP---QRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
           300       310          320       330       340      

>>CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5           (402 aa)
 initn: 1124 init1: 958 opt: 975  Z-score: 622.2  bits: 124.0 E(32554): 2.4e-28
Smith-Waterman score: 1122; 47.2% identity (66.8% similar) in 392 aa overlap (57-410:28-402)

         30        40        50        60        70         80     
pF1KSD PAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQAPLPMHGDPQP-PGLAANNTLPALGAG
                                     ::  : :  :.: : :  ::   :: : :.
CCDS47    MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVP--AAPRYLPPLPAS
                  10        20        30        40          50     

          90         100              110            120       130 
pF1KSD GWAGWR--GPREVVGREPP------PVPPPP-PLPPSSVE-----DDWGGPATEPPASLL
         .  :  :: : .:.  :       .:::: :: :.. :     :.  ::   : :.  
CCDS47 PETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAA
          60        70        80        90       100       110     

             140        150                             160        
pF1KSD SSASSDDFCKEKTE-DRYSLGS-----------SLDSG-----------MRTPLCRICFQ
       ... ...      : .: . :.           : .::            . :.:.::::
CCDS47 KGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQ
         120       130       140       150       160       170     

      170       180       190       200       210       220        
pF1KSD GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAI
       : ::::::.::::::::. ::: ::.::::::: :.:::: :.::::::. :.: :::.:
CCDS47 GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSI
         180       190       200       210       220       230     

      230       240       250       260       270       280        
pF1KSD SLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCI
       :.:..::::. :.::::::::::..::.::.::: : :::.:.:::::::::::::.:::
CCDS47 SITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCI
         240       250       260       270       280       290     

      290       300       310       320       330       340        
pF1KSD GLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSE
       :::.::: .:::.::::.::: .: ::::::. :.:... :     ..:.:    .: . 
CCDS47 GLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRG-----ESSTSRTLWLPLTA
         300       310       320       330            340       350

      350       360       370       380       390       400        
pF1KSD EETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVT
        .. .   : :         ..:  . .:.:..::.....::::. :  .:: :.:::::
CCDS47 LRNRNLVHPTQL--------TSP--RFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVT
              360                 370       380       390       400

      410
pF1KSD TV
       .:
CCDS47 SV
         




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:08:37 2016 done: Thu Nov  3 06:08:38 2016
 Total Scan time:  3.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]