FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1325, 347 aa
  1>>>pF1KSDA1325 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4322+/-0.000934; mu= 15.1848+/- 0.056
 mean_var=65.5275+/-13.478, 0's: 0 Z-trim(104.2): 25  B-trim: 309 in 1/51
 Lambda= 0.158439
 statistics sampled from 7780 (7792) to 7780 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.239), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS3840.1 LRP2BP gene_id:55805|Hs108|chr4         ( 347) 2321 539.6 1.5e-153


>>CCDS3840.1 LRP2BP gene_id:55805|Hs108|chr4              (347 aa)
 initn: 2321 init1: 2321 opt: 2321  Z-score: 2870.4  bits: 539.6 E(32554): 1.5e-153
Smith-Waterman score: 2321; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KSD MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 AYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMAS
              250       260       270       280       290       300

              310       320       330       340       
pF1KSD FYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI
              310       320       330       340       




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:49:58 2016 done: Thu Nov  3 05:49:59 2016
 Total Scan time:  2.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]