Result of FASTA (ccds) for
pF1KSDA1195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1195, 709 aa
1>>>pF1KSDA1195 709 - 709 aa - 709 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8400+/-0.00096; mu= 17.6346+/- 0.058
mean_var=83.1706+/-16.413, 0's: 0 Z-trim(105.9): 25 B-trim: 41 in 1/51
Lambda= 0.140634
statistics sampled from 8667 (8675) to 8667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.266), width: 16
Scan time: 3.840
The best scores are: opt bits E(32554)
CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3 ( 709) 4838 991.9 0
CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6 ( 745) 601 132.3 2.6e-30
>>CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3 (709 aa)
initn: 4838 init1: 4838 opt: 4838 Z-score: 5303.9 bits: 991.9 E(32554): 0
Smith-Waterman score: 4838; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)
10 20 30 40 50 60
pF1KSD MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM
610 620 630 640 650 660
670 680 690 700
pF1KSD SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
670 680 690 700
>>CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6 (745 aa)
initn: 1544 init1: 578 opt: 601 Z-score: 657.6 bits: 132.3 E(32554): 2.6e-30
Smith-Waterman score: 1462; 35.6% identity (65.4% similar) in 739 aa overlap (11-693:6-733)
10 20 30 40 50 60
pF1KSD MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
.: :: .: .:.: ::. :: .:.: :.:::.:: :: ::.::::.
CCDS52 MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPF
10 20 30 40 50
70 80 90 100 110 120
pF1KSD EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
:.::::::..:::..:.:.:.:.::..::::::::.::::::: .. .::. ...
CCDS52 ERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVD
60 70 80 90 100 110
130 140 150 160 170
pF1KSD SEECLDTALALQDQKVLFRSLKMVELFPE-TREATEEEPTMNGETSVEEMGGAVGGVDI-
:: :::::::..:..:::.. .. . : .... . .. ..:: :. : : :..
CCDS52 EVAQLDMALALQDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVD
120 130 140 150 160 170
180 190 200 210
pF1KSD ----GLVPHGLSATNGEMAE----LSQEEREV-------------LAKTKEGMDLVKFGQ
: . .. :. .: :. :.. ...:... .. .
CCDS52 EESYGALYQATVETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNARESLEDQNLKD
180 190 200 210 220 230
220 230 240 250 260
pF1KSD WENIFSKEHAASAL-----TNSSASCESKNKNDSEKEQISSGHNMVE-GEGAPKK----K
.... .: .: . ::..:. :.....: . .:... .: : . .
CCDS52 QDHLYEEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDTSALCNGFPLENICTQ
240 250 260 270 280 290
270 280 290 300 310 320
pF1KSD EPQENQKQQ-DVRTAMETTG-LAPWQDGVLERLKT-AVDAKDYNMY---LVHNGRMLIHF
..::. . : . . :.: . .::. . .. :: :. .. . :: ..
CCDS52 VIDQNQNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGT--VQH
300 310 320 330 340 350
330 340 350 360 370 380
pF1KSD GQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCKPSEHKAVDTS
:: : .. . :.. .::.: ... :. . :... : ::.: ::::::
CCDS52 ILMPD-DEGEGELCWKKVDLGDVKNVDVLS--FSHAPSFNFLSNSCWS-KPKEDKAVDTS
360 370 380 390 400
390 400 410 420 430
pF1KSD DLGITVED---LPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDFATQTYNFEPEQF
:: .. :: : ::: ..: : :. ::.:: : .: .:::... .
CCDS52 DLEVA-EDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAIL
410 420 430 440 450 460
440 450 460 470 480
pF1KSD SSGTVLADLTAAT-----------PGG---LHVELHSECVTRRHNKSSSAFTFTCNKFFR
...:.......:. :. : ..: :::.: . :. : :::.:...::
CCDS52 ATSTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFR
470 480 490 500 510 520
490 500 510 520 530 540
pF1KSD RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFA
: :: :::::: ::.. ::::...:::::: :::. : .: : : ::.:....:..:.
CCDS52 RKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG
530 540 550 560 570 580
550 560 570 580 590 600
pF1KSD IKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMR
..: :. : : .: : : .. :.:::.:.:..::::::. :: ::: :: :::
CCDS52 VQPCVSTVLVEPARNCVL----GLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMR
590 600 610 620 630 640
610 620 630 640 650 660
pF1KSD NICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHL
..:..::: ::::.::: :..: .:..::......:.::. : ... :.: .. ::..::
CCDS52 DVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHL
650 660 670 680 690 700
670 680 690 700
pF1KSD KSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
:.: .:.::.. . : : :: :: ..:
CCDS52 KKCSYNVVEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL
710 720 730 740
709 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:18:34 2016 done: Thu Nov 3 05:18:35 2016
Total Scan time: 3.840 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]