Result of FASTA (omim) for
pF1KSDA1152
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1152, 351 aa
1>>>pF1KSDA1152 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7157+/-0.000328; mu= 15.0458+/- 0.020
mean_var=84.3097+/-16.806, 0's: 0 Z-trim(116.9): 31 B-trim: 957 in 2/53
Lambda= 0.139680
statistics sampled from 28331 (28362) to 28331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.333), width: 16
Scan time: 8.530
The best scores are: opt bits E(85289)
XP_011507996 (OMIM: 616836) PREDICTED: G patch dom ( 398) 513 113.0 1.2e-24
XP_011507993 (OMIM: 616836) PREDICTED: G patch dom ( 490) 512 112.8 1.6e-24
NP_001284683 (OMIM: 616836) G patch domain-contain ( 376) 510 112.3 1.7e-24
XP_016857082 (OMIM: 616836) PREDICTED: G patch dom ( 418) 507 111.8 2.8e-24
XP_011507995 (OMIM: 616836) PREDICTED: G patch dom ( 479) 507 111.8 3.2e-24
XP_016857081 (OMIM: 616836) PREDICTED: G patch dom ( 491) 507 111.8 3.2e-24
XP_011507992 (OMIM: 616836) PREDICTED: G patch dom ( 514) 507 111.8 3.3e-24
NP_060510 (OMIM: 616836) G patch domain-containing ( 528) 507 111.8 3.4e-24
XP_011507991 (OMIM: 616836) PREDICTED: G patch dom ( 551) 507 111.8 3.5e-24
>>XP_011507996 (OMIM: 616836) PREDICTED: G patch domain- (398 aa)
initn: 558 init1: 186 opt: 513 Z-score: 563.6 bits: 113.0 E(85289): 1.2e-24
Smith-Waterman score: 701; 39.5% identity (64.9% similar) in 367 aa overlap (1-345:25-379)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_011 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_011 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_011 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_011 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_011 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_011 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:. : . .: .:. .::.
XP_011 SKNIKKSG----GTPTSMGLSSSQFDLTIPWLVLLTTCAWSHGQHRKTIT
360 370 380 390
>>XP_011507993 (OMIM: 616836) PREDICTED: G patch domain- (490 aa)
initn: 462 init1: 132 opt: 512 Z-score: 561.3 bits: 112.8 E(85289): 1.6e-24
Smith-Waterman score: 512; 43.0% identity (65.0% similar) in 263 aa overlap (1-243:25-279)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_011 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_011 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_011 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
... .::: .. ..: ...: : . . : :.. .. ..
XP_011 RTMTQ--PPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.:::::::::::
XP_011 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGFQARLSRLHGMSS
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERMDSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAAAR
XP_011 KNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAER
300 310 320 330 340 350
>>NP_001284683 (OMIM: 616836) G patch domain-containing (376 aa)
initn: 558 init1: 186 opt: 510 Z-score: 560.7 bits: 112.3 E(85289): 1.7e-24
Smith-Waterman score: 698; 39.6% identity (65.6% similar) in 366 aa overlap (1-344:25-375)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
NP_001 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
NP_001 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
NP_001 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
NP_001 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
NP_001 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
NP_001 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:. : . : ... ..: ..::
NP_001 SKNIKKS-----GGT-PTSMA-TNWTSEIPL
360 370
>>XP_016857082 (OMIM: 616836) PREDICTED: G patch domain- (418 aa)
initn: 558 init1: 186 opt: 507 Z-score: 556.8 bits: 111.8 E(85289): 2.8e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_016 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_016 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_016 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_016 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_016 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_016 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
XP_016 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQVTNKGIVSSF
360 370 380 390 400 410
>>XP_011507995 (OMIM: 616836) PREDICTED: G patch domain- (479 aa)
initn: 584 init1: 186 opt: 507 Z-score: 555.9 bits: 111.8 E(85289): 3.2e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_011 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_011 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_011 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_011 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_011 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_011 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
XP_011 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAE
360 370 380 390 400 410
>>XP_016857081 (OMIM: 616836) PREDICTED: G patch domain- (491 aa)
initn: 558 init1: 186 opt: 507 Z-score: 555.8 bits: 111.8 E(85289): 3.2e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_016 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_016 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_016 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_016 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_016 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_016 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
XP_016 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHEQTSMHLGSLCTGDIKRRRKAAPL
360 370 380 390 400 410
>>XP_011507992 (OMIM: 616836) PREDICTED: G patch domain- (514 aa)
initn: 558 init1: 186 opt: 507 Z-score: 555.5 bits: 111.8 E(85289): 3.3e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_011 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_011 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_011 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_011 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_011 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_011 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
XP_011 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHEQTSMHLGSLCTGDIKRRRKAAPL
360 370 380 390 400 410
>>NP_060510 (OMIM: 616836) G patch domain-containing pro (528 aa)
initn: 584 init1: 186 opt: 507 Z-score: 555.3 bits: 111.8 E(85289): 3.4e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
NP_060 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
NP_060 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
NP_060 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
NP_060 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
NP_060 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
NP_060 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
NP_060 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAE
360 370 380 390 400 410
>>XP_011507991 (OMIM: 616836) PREDICTED: G patch domain- (551 aa)
initn: 584 init1: 186 opt: 507 Z-score: 555.1 bits: 111.8 E(85289): 3.5e-24
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
XP_011 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
XP_011 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
XP_011 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
XP_011 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
XP_011 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
XP_011 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
XP_011 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAE
360 370 380 390 400 410
351 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:09:19 2016 done: Thu Nov 3 05:09:20 2016
Total Scan time: 8.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]