Result of FASTA (ccds) for
pF1KSDA1152
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1152, 351 aa
1>>>pF1KSDA1152 351 - 351 aa - 351 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6810+/-0.00073; mu= 15.1649+/- 0.044
mean_var=79.9710+/-15.405, 0's: 0 Z-trim(109.9): 14 B-trim: 57 in 1/49
Lambda= 0.143419
statistics sampled from 11183 (11190) to 11183 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.344), width: 16
Scan time: 2.510
The best scores are: opt bits E(32554)
CCDS9849.1 GPATCH2L gene_id:55668|Hs108|chr14 ( 477) 2255 475.9 2.9e-134
CCDS9848.1 GPATCH2L gene_id:55668|Hs108|chr14 ( 482) 2255 475.9 3e-134
CCDS73031.1 GPATCH2 gene_id:55105|Hs108|chr1 ( 376) 510 114.8 1.2e-25
CCDS1518.1 GPATCH2 gene_id:55105|Hs108|chr1 ( 528) 507 114.3 2.4e-25
>>CCDS9849.1 GPATCH2L gene_id:55668|Hs108|chr14 (477 aa)
initn: 2255 init1: 2255 opt: 2255 Z-score: 2523.8 bits: 475.9 E(32554): 2.9e-134
Smith-Waterman score: 2255; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MDELVHDLASALEQTSEQNKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YSEASESSLDEATKDCREVAPVTNFSDSDDTMVAKRHPALNAIVKSKQHSWHESDSFTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 YSEASESSLDEATKDCREVAPVTNFSDSDDTMVAKRHPALNAIVKSKQHSWHESDSFTEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD APCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 APCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GHGLCESAENRTFLSKTGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GHGLCESAENRTFLSKTGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RQGDDEQSDWFYEGECVPGFTVPNLLPKWAPDHCSEVERMDSGLDKFSDSTFLLPSRPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RQGDDEQSDWFYEGECVPGFTVPNLLPKWAPDHCSEVERMDSGLDKFSDSTFLLPSRPAQ
250 260 270 280 290 300
310 320 330 340 350
pF1KSD RGYHTRLNRLPGAAARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
::::::::::::::::::::::::::::
CCDS98 RGYHTRLNRLPGAAARCLRKGRRRLVGKETSINTLGTERISHIISDPRQKDFWLPSAGKR
310 320 330 340 350 360
>>CCDS9848.1 GPATCH2L gene_id:55668|Hs108|chr14 (482 aa)
initn: 2255 init1: 2255 opt: 2255 Z-score: 2523.7 bits: 475.9 E(32554): 3e-134
Smith-Waterman score: 2255; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MDELVHDLASALEQTSEQNKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YSEASESSLDEATKDCREVAPVTNFSDSDDTMVAKRHPALNAIVKSKQHSWHESDSFTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 YSEASESSLDEATKDCREVAPVTNFSDSDDTMVAKRHPALNAIVKSKQHSWHESDSFTEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD APCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 APCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GHGLCESAENRTFLSKTGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GHGLCESAENRTFLSKTGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RQGDDEQSDWFYEGECVPGFTVPNLLPKWAPDHCSEVERMDSGLDKFSDSTFLLPSRPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RQGDDEQSDWFYEGECVPGFTVPNLLPKWAPDHCSEVERMDSGLDKFSDSTFLLPSRPAQ
250 260 270 280 290 300
310 320 330 340 350
pF1KSD RGYHTRLNRLPGAAARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
::::::::::::::::::::::::::::
CCDS98 RGYHTRLNRLPGAAARCLRKGRRRLVGKETSINTLGTERISHIISDPRQKEKNKALASDF
310 320 330 340 350 360
>>CCDS73031.1 GPATCH2 gene_id:55105|Hs108|chr1 (376 aa)
initn: 558 init1: 186 opt: 510 Z-score: 574.0 bits: 114.8 E(32554): 1.2e-25
Smith-Waterman score: 698; 39.6% identity (65.6% similar) in 366 aa overlap (1-344:25-375)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
CCDS73 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
CCDS73 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
CCDS73 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
CCDS73 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
CCDS73 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
CCDS73 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:. : . : ... ..: ..::
CCDS73 SKNIKKS-----GGT-PTSMA-TNWTSEIPL
360 370
>>CCDS1518.1 GPATCH2 gene_id:55105|Hs108|chr1 (528 aa)
initn: 584 init1: 186 opt: 507 Z-score: 568.5 bits: 114.3 E(32554): 2.4e-25
Smith-Waterman score: 695; 40.9% identity (66.1% similar) in 342 aa overlap (1-320:25-358)
10 20 30
pF1KSD MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
:.::::::.::::..::: . : . : . :.
CCDS15 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
10 20 30 40 50
40 50 60 70 80
pF1KSD --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREVAPVT--NFSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . . ::::
CCDS15 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
60 70 80 90 100 110
90 100 110 120 130 140
pF1KSD DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
CCDS15 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
120 130 140 150 160 170
150 160 170 180 190
pF1KSD LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
.. . .::: .. ..: ...: : . . : :.. .. ..
CCDS15 RTMT--QPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KSD TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
CCDS15 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
240 250 260 270 280 290
260 270 280 290 300 310
pF1KSD VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
CCDS15 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
300 310 320 330 340 350
320 330 340 350
pF1KSD ARCLRKGRRRLVGKVIPLTVSLAQWGDNIPYGSCVSY
.. ..:
CCDS15 SKNIKKSGGTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAE
360 370 380 390 400 410
351 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:09:18 2016 done: Thu Nov 3 05:09:18 2016
Total Scan time: 2.510 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]