FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1100, 432 aa
  1>>>pF1KSDA1100 432 - 432 aa - 432 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8179+/-0.000943; mu= -4.2736+/- 0.057
 mean_var=383.1905+/-78.162, 0's: 0 Z-trim(117.6): 50  B-trim: 192 in 1/54
 Lambda= 0.065519
 statistics sampled from 18278 (18328) to 18278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.563), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS4404.1 RNF44 gene_id:22838|Hs108|chr5          ( 432) 3131 309.3 4.7e-84
CCDS6604.1 RNF38 gene_id:152006|Hs108|chr9         ( 465) 1836 186.9 3.5e-47
CCDS6603.1 RNF38 gene_id:152006|Hs108|chr9         ( 515) 1836 187.0 3.7e-47


>>CCDS4404.1 RNF44 gene_id:22838|Hs108|chr5               (432 aa)
 initn: 3131 init1: 3131 opt: 3131  Z-score: 1622.6  bits: 309.3 E(32554): 4.7e-84
Smith-Waterman score: 3131; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)

               10        20        30        40        50        60
pF1KSD MRPWALAVTRWPPSAPVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRPWALAVTRWPPSAPVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RPPHLPVEERRASAPAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RPPHLPVEERRASAPAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LPTGQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPTGQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YPSFLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YPSFLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPIC
              370       380       390       400       410       420

              430  
pF1KSD RADASEVPREAE
       ::::::::::::
CCDS44 RADASEVPREAE
              430  

>>CCDS6604.1 RNF38 gene_id:152006|Hs108|chr9              (465 aa)
 initn: 1381 init1: 730 opt: 1836  Z-score: 960.6  bits: 186.9 E(32554): 3.5e-47
Smith-Waterman score: 1836; 60.9% identity (79.8% similar) in 445 aa overlap (1-432:34-465)

                                             10        20        30
pF1KSD                               MRPWALAVTRWPPSAPVGQRRFSAGPGSTP
                                     :::: .. .: :::.  .:..::.   .::
CCDS66 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
            10        20        30        40        50        60   

               40        50        60                 70        80 
pF1KSD GQLWGSPGLEGPLASPPARDERLPSQQPPSRPP---HLP------VEERRASAPAGGSPR
       ..   ::    :.    .: .::  ..  :.     :::      .:: ::  : . :::
CCDS66 ARNRRSP----PVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPR
            70            80        90       100       110         

                 90       100       110       120       130        
pF1KSD MLHPAT---QQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPAC
       .::::.   ::.  :::.:.:.::: ::.:::::::. .:.:: ::::::.::.::.:.:
CCDS66 LLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGC
     120       130       140       150       160       170         

      140       150       160       170       180       190        
pF1KSD SVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQPTHMA
       ::.::::: :.: .:::..:::..:.::::: :.: ::::: ...:::  .:  .: :. 
CCDS66 SVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPH-HPPHLP
     180       190       200       210       220       230         

      200       210       220       230       240       250        
pF1KSD PLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDP
       : :::: .:::. : ::::..:.:.: :..  .:.:::  ::  :.: ::.::..: :::
CCDS66 PPGQFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDP
      240       250       260       270       280       290        

      260       270       280        290       300       310       
pF1KSD LHQELSFGVPYSHMMPRRLSTQ-RYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPT
       ::::.::::::  .:::::. . ::: :::.::       :::.::.::: :::::. : 
CCDS66 LHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPP-------PPYHPSLLPYVLSMLPV-PP
      300       310       320       330              340        350

       320       330       340       350       360       370       
pF1KSD AMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
       :.:::.:..:::.: :.::::::::::::::.:::::::::::::::::::::..:::::
CCDS66 AVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQ
              360       370       380       390       400       410

       380       390       400       410       420       430  
pF1KSD TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
       ::::::. :::.::::::::::::::.::::::::::::::::::::::: :..:
CCDS66 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
              420       430       440       450       460     

>>CCDS6603.1 RNF38 gene_id:152006|Hs108|chr9              (515 aa)
 initn: 1381 init1: 730 opt: 1836  Z-score: 960.1  bits: 187.0 E(32554): 3.7e-47
Smith-Waterman score: 1836; 60.9% identity (79.8% similar) in 445 aa overlap (1-432:84-515)

                                             10        20        30
pF1KSD                               MRPWALAVTRWPPSAPVGQRRFSAGPGSTP
                                     :::: .. .: :::.  .:..::.   .::
CCDS66 QSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
            60        70        80        90       100       110   

               40        50        60                 70        80 
pF1KSD GQLWGSPGLEGPLASPPARDERLPSQQPPSRPP---HLP------VEERRASAPAGGSPR
       ..   ::    :.    .: .::  ..  :.     :::      .:: ::  : . :::
CCDS66 ARNRRSP----PVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPR
           120           130       140       150       160         

                 90       100       110       120       130        
pF1KSD MLHPAT---QQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPAC
       .::::.   ::.  :::.:.:.::: ::.:::::::. .:.:: ::::::.::.::.:.:
CCDS66 LLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGC
     170       180       190       200       210       220         

      140       150       160       170       180       190        
pF1KSD SVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQPTHMA
       ::.::::: :.: .:::..:::..:.::::: :.: ::::: ...:::  .:  .: :. 
CCDS66 SVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPH-HPPHLP
     230       240       250       260       270       280         

      200       210       220       230       240       250        
pF1KSD PLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDP
       : :::: .:::. : ::::..:.:.: :..  .:.:::  ::  :.: ::.::..: :::
CCDS66 PPGQFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDP
      290       300       310       320       330       340        

      260       270       280        290       300       310       
pF1KSD LHQELSFGVPYSHMMPRRLSTQ-RYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPT
       ::::.::::::  .:::::. . ::: :::.::       :::.::.::: :::::. : 
CCDS66 LHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPP-------PPYHPSLLPYVLSMLPV-PP
      350       360       370       380              390        400

       320       330       340       350       360       370       
pF1KSD AMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
       :.:::.:..:::.: :.::::::::::::::.:::::::::::::::::::::..:::::
CCDS66 AVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQ
              410       420       430       440       450       460

       380       390       400       410       420       430  
pF1KSD TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
       ::::::. :::.::::::::::::::.::::::::::::::::::::::: :..:
CCDS66 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
              470       480       490       500       510     




432 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:01:53 2016 done: Thu Nov  3 19:01:54 2016
 Total Scan time:  3.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]