Result of FASTA (omim) for
pF1KSDA1051
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1051, 357 aa
1>>>pF1KSDA1051 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4332+/-0.000411; mu= -5.3422+/- 0.026
mean_var=365.0830+/-74.084, 0's: 0 Z-trim(122.9): 5 B-trim: 0 in 0/56
Lambda= 0.067124
statistics sampled from 41830 (41837) to 41830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.491), width: 16
Scan time: 9.270
The best scores are: opt bits E(85289)
NP_055883 (OMIM: 609810) retrotransposon-derived p ( 708) 2584 263.9 7.6e-70
NP_001171890 (OMIM: 609810) retrotransposon-derive ( 742) 2584 263.9 7.9e-70
NP_001165908 (OMIM: 609810) retrotransposon-derive ( 784) 2584 264.0 8.2e-70
NP_001128360 (OMIM: 611896) retrotransposon-like p (1358) 344 47.3 0.00024
>>NP_055883 (OMIM: 609810) retrotransposon-derived prote (708 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 1374.9 bits: 263.9 E(85289): 7.6e-70
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:352-708)
10 20 30
pF1KSD MLQIHLPGRHTLFVRAMIDSGASGNFIDHE
::::::::::::::::::::::::::::::
NP_055 PGPAVEGPSATGPEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGASGNFIDHE
330 340 350 360 370 380
40 50 60 70 80 90
pF1KSD YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
390 400 410 420 430 440
100 110 120 130 140 150
pF1KSD VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
450 460 470 480 490 500
160 170 180 190 200 210
pF1KSD VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
510 520 530 540 550 560
220 230 240 250 260 270
pF1KSD VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
570 580 590 600 610 620
280 290 300 310 320 330
pF1KSD HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
630 640 650 660 670 680
340 350
pF1KSD PPVPQYPPPQPPPPPPPPPPPPSYSTL
:::::::::::::::::::::::::::
NP_055 PPVPQYPPPQPPPPPPPPPPPPSYSTL
690 700
>>NP_001171890 (OMIM: 609810) retrotransposon-derived pr (742 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 1374.6 bits: 263.9 E(85289): 7.9e-70
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:386-742)
10 20 30
pF1KSD MLQIHLPGRHTLFVRAMIDSGASGNFIDHE
::::::::::::::::::::::::::::::
NP_001 PGPAVEGPSATGPEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGASGNFIDHE
360 370 380 390 400 410
40 50 60 70 80 90
pF1KSD YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
420 430 440 450 460 470
100 110 120 130 140 150
pF1KSD VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
480 490 500 510 520 530
160 170 180 190 200 210
pF1KSD VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
540 550 560 570 580 590
220 230 240 250 260 270
pF1KSD VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
600 610 620 630 640 650
280 290 300 310 320 330
pF1KSD HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
660 670 680 690 700 710
340 350
pF1KSD PPVPQYPPPQPPPPPPPPPPPPSYSTL
:::::::::::::::::::::::::::
NP_001 PPVPQYPPPQPPPPPPPPPPPPSYSTL
720 730 740
>>NP_001165908 (OMIM: 609810) retrotransposon-derived pr (784 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 1374.3 bits: 264.0 E(85289): 8.2e-70
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:428-784)
10 20 30
pF1KSD MLQIHLPGRHTLFVRAMIDSGASGNFIDHE
::::::::::::::::::::::::::::::
NP_001 PGPAVEGPSATGPEIIRSPQDDASSPHLQVMLQIHLPGRHTLFVRAMIDSGASGNFIDHE
400 410 420 430 440 450
40 50 60 70 80 90
pF1KSD YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
460 470 480 490 500 510
100 110 120 130 140 150
pF1KSD VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPPSLPPPAPQPPLYYPVDGYR
520 530 540 550 560 570
160 170 180 190 200 210
pF1KSD VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSEPEMAALRDF
580 590 600 610 620 630
220 230 240 250 260 270
pF1KSD VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARNVKDGLITPTIAPNGAQVLQVKRGWKLQVSYDCRAPNNFTIQNQYPRLSIPNLEDQA
640 650 660 670 680 690
280 290 300 310 320 330
pF1KSD HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLATYTEFVPQIPGYQTYPTYAAYPTYPVGFAWYPVGRDGQGRSLYVPVMITWNPHWYRQ
700 710 720 730 740 750
340 350
pF1KSD PPVPQYPPPQPPPPPPPPPPPPSYSTL
:::::::::::::::::::::::::::
NP_001 PPVPQYPPPQPPPPPPPPPPPPSYSTL
760 770 780
>>NP_001128360 (OMIM: 611896) retrotransposon-like prote (1358 aa)
initn: 316 init1: 316 opt: 344 Z-score: 199.0 bits: 47.3 E(85289): 0.00024
Smith-Waterman score: 344; 35.6% identity (62.4% similar) in 149 aa overlap (1-140:412-558)
10 20 30
pF1KSD MLQIHLPGRHTLFVRAMIDSGASGNFIDHE
.:.... :.. :.:..::::.:::.:..
NP_001 IDSPAPERWMVSSWLPSEVHPDINRAHLFLLLMVRVNPYHSVAVQALVDSGADGNFMDEK
390 400 410 420 430 440
40 50 60 70 80 90
pF1KSD YVAQNGIPLRIKDWPILVEAIDGRPIASGPVVHETHDLIVDLGDHREVLSFDVTQSPFFP
.. .. . : : .: :...:: :.. :: :. :. .:.: . ::.. :: :
NP_001 FAQEHYVELYEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFS
450 460 470 480 490 500
100 110 120 130 140
pF1KSD VVLGVRWLSTHDPNITWSTRSIVFDSEYCRYHCRMYSPIPP---------SLPPPAPQPP
::::.::: .: :.. : .: : :: .: . : :: :: : :.:
NP_001 VVLGIRWLRVHAPEVDWIKGRCTFHSPYCLKNC--FRPPPPCIALERHGMSLLPGLPHPY
510 520 530 540 550
150 160 170 180 190 200
pF1KSD LYYPVDGYRVYQPVRYYYVQNVYTPVDEHVYPDHRLVDPHIEMIPGAHSIPSGHVYSLSE
NP_001 SDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSETFYECPSTAPWEPV
560 570 580 590 600 610
357 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:44:28 2016 done: Thu Nov 3 04:44:29 2016
Total Scan time: 9.270 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]