FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0873, 447 aa
  1>>>pF1KSDA0873 447 - 447 aa - 447 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9696+/-0.00119; mu= 9.5157+/- 0.071
 mean_var=96.5973+/-19.341, 0's: 0 Z-trim(103.7): 26  B-trim: 49 in 1/49
 Lambda= 0.130494
 statistics sampled from 7534 (7540) to 7534 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.232), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS9982.1 BAG5 gene_id:9529|Hs108|chr14           ( 447) 2879 552.8 2.6e-157
CCDS41995.1 BAG5 gene_id:9529|Hs108|chr14          ( 488) 2879 552.8 2.8e-157


>>CCDS9982.1 BAG5 gene_id:9529|Hs108|chr14                (447 aa)
 initn: 2879 init1: 2879 opt: 2879  Z-score: 2937.7  bits: 552.8 E(32554): 2.6e-157
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
              370       380       390       400       410       420

              430       440       
pF1KSD KAARKQAVRLAQNILSYLDLKSDEWEY
       :::::::::::::::::::::::::::
CCDS99 KAARKQAVRLAQNILSYLDLKSDEWEY
              430       440       

>>CCDS41995.1 BAG5 gene_id:9529|Hs108|chr14               (488 aa)
 initn: 2879 init1: 2879 opt: 2879  Z-score: 2937.1  bits: 552.8 E(32554): 2.8e-157
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:42-488)

                                             10        20        30
pF1KSD                               MDMGNQHPSISRLQEIQKEVKSVEQQVIGF
                                     ::::::::::::::::::::::::::::::
CCDS41 PFDRNQELETCIRPLWTPSGSACETEHNKSMDMGNQHPSISRLQEIQKEVKSVEQQVIGF
              20        30        40        50        60        70 

               40        50        60        70        80        90
pF1KSD SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
              80        90       100       110       120       130 

              100       110       120       130       140       150
pF1KSD RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
             140       150       160       170       180       190 

              160       170       180       190       200       210
pF1KSD HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
             200       210       220       230       240       250 

              220       230       240       250       260       270
pF1KSD ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
             260       270       280       290       300       310 

              280       290       300       310       320       330
pF1KSD RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
             320       330       340       350       360       370 

              340       350       360       370       380       390
pF1KSD ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
             380       390       400       410       420       430 

              400       410       420       430       440       
pF1KSD TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
             440       450       460       470       480        




447 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:52:09 2016 done: Thu Nov  3 03:52:09 2016
 Total Scan time:  2.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]