FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0794, 489 aa
  1>>>pF1KSDA0794 489 - 489 aa - 489 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6019+/-0.000909; mu= 12.5104+/- 0.055
 mean_var=104.6032+/-20.660, 0's: 0 Z-trim(108.7): 11  B-trim: 0 in 0/52
 Lambda= 0.125401
 statistics sampled from 10393 (10401) to 10393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.319), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS43191.1 UBXN7 gene_id:26043|Hs108|chr3         ( 489) 3262 600.8 1.1e-171


>>CCDS43191.1 UBXN7 gene_id:26043|Hs108|chr3              (489 aa)
 initn: 3262 init1: 3262 opt: 3262  Z-score: 3196.1  bits: 600.8 E(32554): 1.1e-171
Smith-Waterman score: 3262; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)

               10        20        30        40        50        60
pF1KSD MAAHGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAHGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TSSASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSSASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFAC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD THFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 THFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ
              430       440       450       460       470       480

                
pF1KSD ETVFVQERN
       :::::::::
CCDS43 ETVFVQERN
                




489 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:11:52 2016 done: Thu Nov  3 03:11:53 2016
 Total Scan time:  3.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]