Result of FASTA (ccds) for
pF1KSDA0733
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0733, 693 aa
1>>>pF1KSDA0733 693 - 693 aa - 693 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7388+/-0.00112; mu= -5.7961+/- 0.067
mean_var=267.4605+/-53.468, 0's: 0 Z-trim(111.7): 27 B-trim: 0 in 0/52
Lambda= 0.078423
statistics sampled from 12552 (12565) to 12552 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.386), width: 16
Scan time: 3.930
The best scores are: opt bits E(32554)
CCDS5214.1 TAB2 gene_id:23118|Hs108|chr6 ( 693) 4679 543.2 4.8e-154
CCDS14226.1 TAB3 gene_id:257397|Hs108|chrX ( 712) 612 83.0 1.6e-15
>>CCDS5214.1 TAB2 gene_id:23118|Hs108|chr6 (693 aa)
initn: 4679 init1: 4679 opt: 4679 Z-score: 2879.1 bits: 543.2 E(32554): 4.8e-154
Smith-Waterman score: 4679; 100.0% identity (100.0% similar) in 693 aa overlap (1-693:1-693)
10 20 30 40 50 60
pF1KSD MAQGSHQIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGEGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAQGSHQIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGEGDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NFSDDSGISGLRNHMTSLNLDLQSQNIYHHGREGSRMNGSRTLTHSISDGQLQGGQSNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NFSDDSGISGLRNHMTSLNLDLQSQNIYHHGREGSRMNGSRTLTHSISDGQLQGGQSNSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LFQQEPQTAPAQVPQGFNVFGMSSSSGASNSAPHLGFHLGSKGTSSLSQQTPRFNPIMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LFQQEPQTAPAQVPQGFNVFGMSSSSGASNSAPHLGFHLGSKGTSSLSQQTPRFNPIMVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LAPNIQTGRNTPTSLHIHGVPPPVLNSPQGNSIYIRPYITTPGGTTRQTQQHSGWVSQFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LAPNIQTGRNTPTSLHIHGVPPPVLNSPQGNSIYIRPYITTPGGTTRQTQQHSGWVSQFN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PMNPQQVYQPSQPGPWTTCPASNPLSHTSSQQPNQQGHQTSHVYMPISSPTTSQPPTIHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PMNPQQVYQPSQPGPWTTCPASNPLSHTSSQQPNQQGHQTSHVYMPISSPTTSQPPTIHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SGSSQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNNSSKLRSSGPRTSSTSSSVNSQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SGSSQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNNSSKLRSSGPRTSSTSSSVNSQTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NRNQPTVYIAASPPNTDELMSRSQPKVYISANAATGDEQVMRNQPTLFISTNSGASAASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NRNQPTVYIAASPPNTDELMSRSQPKVYISANAATGDEQVMRNQPTLFISTNSGASAASR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NMSGQVSMGPAFIHHHPPKSRAIGNNSATSPRVVVTQPNTKYTFKITVSPNKPPAVSPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NMSGQVSMGPAFIHHHPPKSRAIGNNSATSPRVVVTQPNTKYTFKITVSPNKPPAVSPGV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VSPTFELTNLLNHPDHYVETENIQHLTDPTLAHVDRISETRKLSMGSDDAAYTQALLVHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VSPTFELTNLLNHPDHYVETENIQHLTDPTLAHVDRISETRKLSMGSDDAAYTQALLVHQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD KARMERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQQLRSCNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KARMERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQQLRSCNR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPVPPKPKDQRSIIKTPKTQDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPVPPKPKDQRSIIKTPKTQDT
610 620 630 640 650 660
670 680 690
pF1KSD EDDEGAQWNCTACTFLNHPALIRCEQCEMPRHF
:::::::::::::::::::::::::::::::::
CCDS52 EDDEGAQWNCTACTFLNHPALIRCEQCEMPRHF
670 680 690
>>CCDS14226.1 TAB3 gene_id:257397|Hs108|chrX (712 aa)
initn: 1101 init1: 406 opt: 612 Z-score: 392.1 bits: 83.0 E(32554): 1.6e-15
Smith-Waterman score: 1329; 37.3% identity (59.3% similar) in 783 aa overlap (1-688:1-707)
10 20 30 40 50 60
pF1KSD MAQGSHQIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGEGDL
:::.: :.:.::::::::.:::.:: :::.:::::::::.::: .:::::..::: :
CCDS14 MAQSSPQLDIQVLHDLRQRFPEIPEGVVSQCMLQNNNNLEACCRALSQESSKYLYME--Y
10 20 30 40 50
70 80 90 100 110 120
pF1KSD NFSDDSGISGLRNHMTSLNLDLQSQNIYHHGREGSRMNGSRTLTHSISDGQLQGGQSNSE
. ::. .. ::.. .:: ..: . :: : .:...::.:::.:: :::... .. ..
CCDS14 HSPDDNRMN--RNRLLHINLGIHSPSSYHPG-DGAQLNGGRTLVHSSSDGHIDPQHAAGK
60 70 80 90 100 110
130 140 150 160
pF1KSD LFQ---QEPQTAPAQVPQ--GFNVFGMSSSSGASNSAPHLGFHLGSKGTSSLS-------
. :::..::: : ..: : :. .. .. . : . :. ....
CCDS14 QLICLVQEPHSAPAVVAATPNYNPFFMNEQNRSAATPPSQPPQQPSSMQTGMNPSAMQGP
120 130 140 150 160 170
170 180 190 200 210
pF1KSD ---------QQTPRF--NPIMVTLAPNIQTGRNTPTSLHI-HGVPPPVLNSPQGNSIYIR
.. ::. ::: ::.. :. .:...: .:.: .: . .:: .:::::
CCDS14 SPPPPPPSYMHIPRYSTNPITVTVSQNLPSGQTVPRALQILPQIPSNLYGSP--GSIYIR
180 190 200 210 220 230
220 230 240 250
pF1KSD PYITTPGGTTRQTQQHSGW-------VSQFN----PMNP-QQVYQPSQPGP---------
:. ... ::: : . : : ... :. : :: ::::: .:
CCDS14 Q--TSQSSSGRQTPQSTPWQSSPQGPVPHYSQRPLPVYPHQQNYQPSQYSPKQQQIPQSA
240 250 260 270 280 290
260 270 280 290 300
pF1KSD WTTCPASNPLSHTSSQQPNQQGHQTSHVYMPISSPTTSQP------PTIHSSGSSQSSAH
. . : :. : :: : . : : .:..:: ::.:. : : ... .:.: :.
CCDS14 YHSPPPSQCPSPFSSPQHQVQPSQLGHIFMP-PSPSTTPPHPYQQGPPSYQKQGSHSVAY
300 310 320 330 340 350
310 320 330 340 350 360
pF1KSD SQYNIQNISTGPRKNQIEIKLEPPQRNNSSKLRSSGPRTSSTSSSVNSQTLNRNQPTVYI
:. ...: : : .::: .:: :: ... :: .: ...: ::: ..:
CCDS14 LPYTASSLSKGSMK-KIEITVEPSQRPGTAINRSPSP--------ISNQPSPRNQHSLYT
360 370 380 390 400
370 380 390 400 410 420
pF1KSD AASPPNTDELMSR---SQPKVYISANAATGDEQVMRNQPTLFISTNSGASAASRNMSGQV
:..::... :: :::: .:.: . . .:::
CCDS14 ATTPPSSSP--SRGISSQPKPPFSVNPV----YITYTQPT--------------------
410 420 430
430 440 450 460 470 480
pF1KSD SMGPAFIHHHPPKSRAIGNNSATSPRVVVTQPNTKYTFKITVSPNKPPAVSPGVVSPTFE
::. : . ::::. :: .:::::. . : .
CCDS14 --GPSCT---P----------SPSPRVI---PNPTTVFKITVGR-----------ATTEN
440 450 460
490 500 510 520 530 540
pF1KSD LTNLLNHPDHYVETENIQHLTDPTLAHVDRISET--RKLSMGSDDAAYTQALLVHQKARM
: ::... .. . : :: .. . .. :. :. : :::: :::::::.::.:::
CCDS14 LLNLVDQEERSAAPEPIQPISVIPGSGGEKGSHKYQRSSSSGSDDYAYTQALLLHQRARM
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD ERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQQLRSCNRQLQI
::: ..:...:..:..:::::: ::..: .:::.: . . ::. ::: .::: ::::::
CCDS14 ERLAKQLKLEKEELERLKSEVNGMEHDLMQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQI
530 540 550 560 570 580
610 620 630 640 650
pF1KSD DIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPV-PPKP--KDQ----------RSI
..:: ::.::.:.:: .:.:.:..:::::: ::: :::: ::. : :
CCDS14 NVDCTLKEVDLLQSRG-NFDPKAMNNFYDNIE-PGPVVPPKPSKKDSSDPCTIERKARRI
590 600 610 620 630 640
660 670 680
pF1KSD -------------------------IKTPKTQDTEDD-EGAQWNCTACTFLNHPALIRCE
..:.:: ..: ::: ::: .::::::::: :::
CCDS14 SVTSKVQADIHDTQAAAADEHRTGSTQSPRTQPRDEDYEGAPWNCDSCTFLNHPALNRCE
650 660 670 680 690 700
690
pF1KSD QCEMPRHF
:::
CCDS14 QCEMPRYT
710
693 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:50:30 2016 done: Thu Nov 3 02:50:31 2016
Total Scan time: 3.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]