FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0669, 780 aa
  1>>>pF1KSDA0669 780 - 780 aa - 780 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.0133+/-0.00123; mu= -21.9165+/- 0.074
 mean_var=652.6966+/-138.386, 0's: 0 Z-trim(116.8): 70  B-trim: 181 in 1/53
 Lambda= 0.050202
 statistics sampled from 17357 (17420) to 17357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.535), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3         ( 780) 5200 391.9 2.1e-108


>>CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3              (780 aa)
 initn: 5200 init1: 5200 opt: 5200  Z-score: 2059.7  bits: 391.9 E(32554): 2.1e-108
Smith-Waterman score: 5200; 100.0% identity (100.0% similar) in 780 aa overlap (1-780:1-780)

               10        20        30        40        50        60
pF1KSD MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EVCERSSSEETLNNVGDAETPGTVSPNLLLDGQLAAAAAAPANGGGVVSARSVSGALAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EVCERSSSEETLNNVGDAETPGTVSPNLLLDGQLAAAAAAPANGGGVVSARSVSGALAST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LAAAATSAPAPGAPGGPQLAGSSAGPVTAAPSQPPTTCSSRFRVIKLDHGSGEPYRRGRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LAAAATSAPAPGAPGGPQLAGSSAGPVTAAPSQPPTTCSSRFRVIKLDHGSGEPYRRGRW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TCMEYYERDSDSSVLTRSGDCIRHSSTFDQTAERDSGLGATGGSVVVVVASMQGAHGPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TCMEYYERDSDSSVLTRSGDCIRHSSTFDQTAERDSGLGATGGSVVVVVASMQGAHGPES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GTDSSLTAVSQLPPSEKMSQPTPAQPQSFSVGQPQPPPPPVGGAVAQSSAPLPPFPGAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GTDSSLTAVSQLPPSEKMSQPTPAQPQSFSVGQPQPPPPPVGGAVAQSSAPLPPFPGAAT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPAAQQPQQFAYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPAAQQPQQFAYP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QPQIPPGHLLPVQPSGQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QPQIPPGHLLPVQPSGQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNAS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SVGAQLMGASSQPSEAMAPRTGPAQGGQVAPCQPTGVPPATVGGVVQPCLGPAGAGQPQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVGAQLMGASSQPSEAMAPRTGPAQGGQVAPCQPTGVPPATVGGVVQPCLGPAGAGQPQS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQSQQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD LSSHTPVSRSSSIIQHVGLPLAPGTHSAPTSLPQSDLSQFQTQTQPLVGQVDDTRRKSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSSHTPVSRSSSIIQHVGLPLAPGTHSAPTSLPQSDLSQFQTQTQPLVGQVDDTRRKSEP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPQPPLSLIAENKPVVKPPVADSLANPLQLTPMNSLATSVFSIAIPVDGDEDRNPSTAFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPQPPLSLIAENKPVVKPPVADSLANPLQLTPMNSLATSVFSIAIPVDGDEDRNPSTAFY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QAFHLNTLKESKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QAFHLNTLKESKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD ERNSLLERENALLKSLSSNDQLSQLPTQQANPGSTSQQQAVIAQPPQPTQPPQQPNVSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERNSLLERENALLKSLSSNDQLSQLPTQQANPGSTSQQQAVIAQPPQPTQPPQQPNVSSA
              730       740       750       760       770       780




780 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:38:37 2016 done: Thu Nov  3 02:38:38 2016
 Total Scan time:  3.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]