Result of FASTA (omim) for
pF1KSDA0646
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0646, 485 aa
1>>>pF1KSDA0646 485 - 485 aa - 485 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8168+/-0.000569; mu= -5.2962+/- 0.035
mean_var=427.6854+/-87.703, 0's: 0 Z-trim(118.2): 7 B-trim: 25 in 1/54
Lambda= 0.062017
statistics sampled from 30817 (30824) to 30817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.361), width: 16
Scan time: 7.600
The best scores are: opt bits E(85289)
NP_003949 (OMIM: 611685) E3 ubiquitin-protein liga ( 485) 3233 303.9 6.6e-82
XP_016866951 (OMIM: 611685) PREDICTED: E3 ubiquiti ( 428) 2823 267.2 6.7e-71
NP_898901 (OMIM: 611685) E3 ubiquitin-protein liga ( 448) 2738 259.6 1.3e-68
XP_016866952 (OMIM: 611685) PREDICTED: E3 ubiquiti ( 391) 2328 222.8 1.4e-57
XP_006715304 (OMIM: 611685) PREDICTED: E3 ubiquiti ( 455) 2326 222.7 1.7e-57
XP_006715305 (OMIM: 611685) PREDICTED: E3 ubiquiti ( 418) 2317 221.9 2.8e-57
XP_016866953 (OMIM: 611685) PREDICTED: E3 ubiquiti ( 380) 2162 208.0 3.9e-53
>>NP_003949 (OMIM: 611685) E3 ubiquitin-protein ligase R (485 aa)
initn: 3233 init1: 3233 opt: 3233 Z-score: 1591.5 bits: 303.9 E(85289): 6.6e-82
Smith-Waterman score: 3233; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)
10 20 30 40 50 60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
430 440 450 460 470 480
pF1KSD AKRLF
:::::
NP_003 AKRLF
>>XP_016866951 (OMIM: 611685) PREDICTED: E3 ubiquitin-pr (428 aa)
initn: 2823 init1: 2823 opt: 2823 Z-score: 1393.9 bits: 267.2 E(85289): 6.7e-71
Smith-Waterman score: 2823; 100.0% identity (100.0% similar) in 428 aa overlap (58-485:1-428)
30 40 50 60 70 80
pF1KSD GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWL
::::::::::::::::::::::::::::::
XP_016 MISRNHCVLKQNPEGQWTIMDNKSLNGVWL
10 20 30
90 100 110 120 130 140
pF1KSD NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKN
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD KELRTKRKFSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELRTKRKFSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD TALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKH
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD EAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD EIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKE
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK
340 350 360 370 380 390
450 460 470 480
pF1KSD TYSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF
::::::::::::::::::::::::::::::::::::::
XP_016 TYSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF
400 410 420
>>NP_898901 (OMIM: 611685) E3 ubiquitin-protein ligase R (448 aa)
initn: 2738 init1: 2738 opt: 2738 Z-score: 1352.5 bits: 259.6 E(85289): 1.3e-68
Smith-Waterman score: 2738; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)
10 20 30 40 50 60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEQRDCSEDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
NP_898 ALRAFERLPGSASLRWSGGFSLAVTPLL
430 440
>>XP_016866952 (OMIM: 611685) PREDICTED: E3 ubiquitin-pr (391 aa)
initn: 2328 init1: 2328 opt: 2328 Z-score: 1155.0 bits: 222.8 E(85289): 1.4e-57
Smith-Waterman score: 2328; 100.0% identity (100.0% similar) in 355 aa overlap (58-412:1-355)
30 40 50 60 70 80
pF1KSD GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWL
::::::::::::::::::::::::::::::
XP_016 MISRNHCVLKQNPEGQWTIMDNKSLNGVWL
10 20 30
90 100 110 120 130 140
pF1KSD NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKN
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD KELRTKRKFSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELRTKRKFSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD TALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKH
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD EAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD EIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKE
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK
:::::::::::::::::::::::::
XP_016 EVLSHMNDVLENELQCIICSEYFIEQRDCSEDRALRAFERLPGSASLRWSGGFSLAVTPL
340 350 360 370 380 390
>>XP_006715304 (OMIM: 611685) PREDICTED: E3 ubiquitin-pr (455 aa)
initn: 2348 init1: 2309 opt: 2326 Z-score: 1153.2 bits: 222.7 E(85289): 1.7e-57
Smith-Waterman score: 2970; 93.8% identity (93.8% similar) in 485 aa overlap (1-485:1-455)
10 20 30 40 50 60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQE--------------
310 320 330 340
370 380 390 400 410 420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
::::::::::::::::::::::::::::::::::::::::::::
XP_006 ----------------EEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
350 360 370 380 390
430 440 450 460 470 480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
400 410 420 430 440 450
pF1KSD AKRLF
:::::
XP_006 AKRLF
>>XP_006715305 (OMIM: 611685) PREDICTED: E3 ubiquitin-pr (418 aa)
initn: 2348 init1: 2309 opt: 2317 Z-score: 1149.3 bits: 221.9 E(85289): 2.8e-57
Smith-Waterman score: 2475; 92.7% identity (92.7% similar) in 412 aa overlap (1-412:1-382)
10 20 30 40 50 60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQE--------------
310 320 330 340
370 380 390 400 410 420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
::::::::::::::::::::::::::::::::::::
XP_006 ----------------EEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEQRDCSEDR
350 360 370 380 390
430 440 450 460 470 480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
XP_006 ALRAFERLPGSASLRWSGGFSLAVTPLL
400 410
>>XP_016866953 (OMIM: 611685) PREDICTED: E3 ubiquitin-pr (380 aa)
initn: 2162 init1: 2162 opt: 2162 Z-score: 1074.9 bits: 208.0 E(85289): 3.9e-53
Smith-Waterman score: 2162; 99.7% identity (100.0% similar) in 333 aa overlap (80-412:12-344)
50 60 70 80 90 100
pF1KSD LVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG
.:::::::::::::::::::::::::::::
XP_016 MKLISSFFHFPQSLNGVWLNRARLEPLRVYSIHQGDYIQLG
10 20 30 40
110 120 130 140 150 160
pF1KSD VPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGP
50 60 70 80 90 100
170 180 190 200 210 220
pF1KSD SNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTE
110 120 130 140 150 160
230 240 250 260 270 280
pF1KSD VHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQME
170 180 190 200 210 220
290 300 310 320 330 340
pF1KSD QELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWA
230 240 250 260 270 280
350 360 370 380 390 400
pF1KSD LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEY
290 300 310 320 330 340
410 420 430 440 450 460
pF1KSD FIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVK
:::
XP_016 FIEQRDCSEDRALRAFERLPGSASLRWSGGFSLAVTPLL
350 360 370 380
485 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:29:30 2016 done: Thu Nov 3 02:29:31 2016
Total Scan time: 7.600 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]