FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0646, 485 aa
  1>>>pF1KSDA0646 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1072+/-0.00135; mu= -7.2422+/- 0.080
 mean_var=396.9564+/-82.901, 0's: 0 Z-trim(110.5): 30  B-trim: 0 in 0/53
 Lambda= 0.064373
 statistics sampled from 11631 (11637) to 11631 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.357), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS4834.1 RNF8 gene_id:9025|Hs108|chr6            ( 485) 3233 314.7 1.4e-85
CCDS4833.1 RNF8 gene_id:9025|Hs108|chr6            ( 448) 2738 268.7 9.2e-72


>>CCDS4834.1 RNF8 gene_id:9025|Hs108|chr6                 (485 aa)
 initn: 3233 init1: 3233 opt: 3233  Z-score: 1649.9  bits: 314.7 E(32554): 1.4e-85
Smith-Waterman score: 3233; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)

               10        20        30        40        50        60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
              430       440       450       460       470       480

            
pF1KSD AKRLF
       :::::
CCDS48 AKRLF
            

>>CCDS4833.1 RNF8 gene_id:9025|Hs108|chr6                 (448 aa)
 initn: 2738 init1: 2738 opt: 2738  Z-score: 1401.9  bits: 268.7 E(32554): 9.2e-72
Smith-Waterman score: 2738; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KSD MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS48 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEQRDCSEDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
                                                                   
CCDS48 ALRAFERLPGSASLRWSGGFSLAVTPLL                                
              430       440                                        




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:29:29 2016 done: Thu Nov  3 02:29:30 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]